PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON88281.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C3H
Protein Properties Length: 485aa    MW: 50860.6 Da    PI: 8.2653
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON88281.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.91.4e-125075227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                +++ C f++rtG+C yG+rC+F+H++
  PON88281.1 50 DEADCIFYLRTGYCGYGSRCRFNHPR 75
                6799********************96 PP

2zf-CCCH37.83.3e-1299121527
                 --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                  C++f+rtGtCk+G++Ck++H++
  PON88281.1  99 VCQYFMRTGTCKFGASCKYHHPR 121
                 6********************96 PP

3zf-CCCH36.48.5e-12142167227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+++ +tG+Ck+G++CkF+H++
  PON88281.1 142 GEKECSYYVKTGQCKFGASCKFHHPQ 167
                 7899********************97 PP

4zf-CCCH37.15.5e-12308333227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++  C++++rtG Ck+G++C+++H+p
  PON88281.1 308 GQQDCQYYMRTGDCKFGSSCRYHHPP 333
                 6789********************97 PP

5zf-CCCH35.32e-11355378326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  +lC+++a+ G Ck+G+ CkF H+
  PON88281.1 355 APLCSHYAQRGVCKFGPACKFDHP 378
                 68*********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    
MERYGRATTE GGSQSDPSPE WTGTGPETGL EEPVWPLGLG REELYPERPD EADCIFYLRT  60
GYCGYGSRCR FNHPRDRGAV MGVARAGGGE FPERVGQLVC QYFMRTGTCK FGASCKYHHP  120
RQGGGSAGPV SLNYDGYPLR PGEKECSYYV KTGQCKFGAS CKFHHPQSAG MQLHVPSPAT  180
PVPPVPASVP AHTLYPQMQS PSGSSSQQYG VVVARPSLVQ GSYVQGPYGP VLISPGMVPL  240
PGWGPYVASV SPLPSPSNQP PVGSGQFYGV TQLSHSAPPY TGPYPPGASP AGPSISSQKE  300
HSFPERPGQQ DCQYYMRTGD CKFGSSCRYH HPPDIIAPKT TVNLSSAGLP MRPGAPLCSH  360
YAQRGVCKFG PACKFDHPVG TLSYSPSASS LSDMPVAPYP VGSAIGTLAP SSSSSDLRPE  420
LTPGSTKDST SARMSSSMSS SSGSVGSTFS KGGPASHVSL QQPAQNPGTS TGGNASTSSE  480
SRTSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-137C3H family protein