PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON88073.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 215aa MW: 25218 Da PI: 8.4616 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.1 | 1.7e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRr g+lKKA+ELSvLCd+evaviifs++g+lye+ss PON88073.1 9 KRIENATNRQVTFSKRRSGLLKKAHELSVLCDVEVAVIIFSQKGRLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 65.5 | 1.8e-22 | 77 | 170 | 4 | 97 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++++ +e+ + +l+ e + L k+ie L+ ++R+llG d++s+s++eLq++ +Le+sl++iR++K++l++eqie+l ke+ l een +Lr k PON88073.1 77 RTNNIEAEQYMRQLKLETSELAKKIELLEVSKRKLLGHDISSCSYEELQEMDCRLERSLRSIRARKDQLFKEQIEQLEAKERLLLEENIQLRGK 170 44455788889999*****************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence |
MVRGKIQMKR IENATNRQVT FSKRRSGLLK KAHELSVLCD VEVAVIIFSQ KGRLYEFSST 60 DMQKMIERYR KHAKDERTNN IEAEQYMRQL KLETSELAKK IELLEVSKRK LLGHDISSCS 120 YEELQEMDCR LERSLRSIRA RKDQLFKEQI EQLEAKERLL LEENIQLRGK SAIGANLWQP 180 LTQEKEVVTY CSQSTDSTNT ELETELYIGL PEIRC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 2e-85 | MIKC_MADS family protein |