PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON87995.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

CO-like

Protein Properties

Length: 409aa MW: 44127.1 Da PI: 4.5919

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON87995.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.3	4.9e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ PON87995.1 4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnilskrHSR 44 7*****************************65677777765 PP
2	zf-B_box	23.2	1.5e-07	46	89	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C + ++ lC++C +H g H++++ PON87995.1 46 LLCERCNSQPALVRCAEERVSLCQNCDWMGH-GastssstHKRQT 89 57*****************************.5588888888776 PP
3	CCT	63.5	6.3e-22	352	395	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ PON87995.1 352 RNDAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 395 999**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANILSK RHSRTLLCER CNSQPALVRC 60 AEERVSLCQN CDWMGHGAST SSSTHKRQTI SCYSGCPSAA ELSSIWSFVL DSPSAGESAC 120 EQELGLMSIN ENSTGNAPGL SENASGSVGV NNVPSMAKAS VWPSLSSVPE LNAASQVLDL 180 PDDCVNATLP KLSFAGIKGP ELCANDDLYA DLDMDEVDLN FENYEELFGV ALNNSEELFE 240 NGGIDSLFET TDMSGADSNC QGAVAAEESV GLLNTMQPAC STAASADSAM SAKTEPLLCF 300 TRQAHSSVSF SGPNGETSAG DFQDCGASSM LLMGEPPWCP PSQENSIQSV NRNDAVMRYK 360 EKKKTRKFEK RVRYASRKAR ADVRKRVKGR FVKAGDAYDY DPLNQTRSY

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANILSK RHSRTLLCER CNSQPALVRC  60
AEERVSLCQN CDWMGHGAST SSSTHKRQTI SCYSGCPSAA ELSSIWSFVL DSPSAGESAC  120
EQELGLMSIN ENSTGNAPGL SENASGSVGV NNVPSMAKAS VWPSLSSVPE LNAASQVLDL  180
PDDCVNATLP KLSFAGIKGP ELCANDDLYA DLDMDEVDLN FENYEELFGV ALNNSEELFE  240
NGGIDSLFET TDMSGADSNC QGAVAAEESV GLLNTMQPAC STAASADSAM SAKTEPLLCF  300
TRQAHSSVSF SGPNGETSAG DFQDCGASSM LLMGEPPWCP PSQENSIQSV NRNDAVMRYK  360
EKKKTRKFEK RVRYASRKAR ADVRKRVKGR FVKAGDAYDY DPLNQTRSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-125	CO-like family protein