PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON87800.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 442aa MW: 47613.3 Da PI: 8.2604

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON87800.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.5	3.4e-11	48	73	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f++rtG C yG +C+F+H+ PON87800.1 48 PGEPDCIFYLRTGLCGYGTNCRFNHP 73 5789*********************8 PP
2	zf-CCCH	38.5	1.9e-12	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++CkF+H++ PON87800.1 92 QPDCGYFLKTGTCKYGSTCKFHHPR 116 789********************96 PP
3	zf-CCCH	34	5e-11	139	161	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+++ rtG Ck+G+ CkF+H++ PON87800.1 139 SCPYYVRTGACKFGPACKFHHPQ 161 6********************97 PP
4	zf-CCCH	37.7	3.5e-12	285	310	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG Ck++H++ PON87800.1 285 DQPECRYFMNTGTCKYGTECKYHHPK 310 689*********************96 PP
5	zf-CCCH	34.6	3.1e-11	330	354	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++ +G CkyG++CkF H+ PON87800.1 330 GQAVCSYYSMYGLCKYGPTCKFDHP 354 7899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MPDTRQPVKN AGPNQSDGNI EEAIRRLKIN DNQEGGGVAQ TNPFPDRPGE PDCIFYLRTG 60 LCGYGTNCRF NHPAYAPQVA QYNGELPERV GQPDCGYFLK TGTCKYGSTC KFHHPRDRRG 120 AGPVSFNVLG LPMRQEEKSC PYYVRTGACK FGPACKFHHP QPASLGTAFP GGPPPAFGSA 180 GSAVLPSSNL PYAGGLQAWS LPRVPYPLSG PQPQPQPYMP VVVSPSQGIM PAGVWNTYVG 240 NISPISPAGI LGSSLVYNPR NPGESGSAGQ VNLSNSTPNL PDRPDQPECR YFMNTGTCKY 300 GTECKYHHPK ERMAQAAPIA NQIGLPSRPG QAVCSYYSMY GLCKYGPTCK FDHPTMQNLY 360 NYGLSLPAML DSPYLYYTKG SSTLHVPETS HSLASKSFDV VPKPLSNKNH NSDSRLSDDS 420 AKQASSLAHS PPSSEASEDQ SG

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MPDTRQPVKN AGPNQSDGNI EEAIRRLKIN DNQEGGGVAQ TNPFPDRPGE PDCIFYLRTG  60
LCGYGTNCRF NHPAYAPQVA QYNGELPERV GQPDCGYFLK TGTCKYGSTC KFHHPRDRRG  120
AGPVSFNVLG LPMRQEEKSC PYYVRTGACK FGPACKFHHP QPASLGTAFP GGPPPAFGSA  180
GSAVLPSSNL PYAGGLQAWS LPRVPYPLSG PQPQPQPYMP VVVSPSQGIM PAGVWNTYVG  240
NISPISPAGI LGSSLVYNPR NPGESGSAGQ VNLSNSTPNL PDRPDQPECR YFMNTGTCKY  300
GTECKYHHPK ERMAQAAPIA NQIGLPSRPG QAVCSYYSMY GLCKYGPTCK FDHPTMQNLY  360
NYGLSLPAML DSPYLYYTKG SSTLHVPETS HSLASKSFDV VPKPLSNKNH NSDSRLSDDS  420
AKQASSLAHS PPSSEASEDQ SG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-107	C3H family protein