PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON87121.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

Trihelix

Protein Properties

Length: 700aa MW: 79621 Da PI: 6.8257

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON87121.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.7	1.1e-16	129	205	2	84
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W+++evlaL+++r+ m++++ + We+vs+k++e gf+rs+++Ckek+e+ + ++ + +++ + + ++ ++++++f++ PON87121.1 129 WSNDEVLALLRVRSTMDNWFPDV-----TWEHVSRKLAELGFKRSAEKCKEKFEEESSYFNNNNNNHNIN-NNCTKNYRLFHH 205 *******************98.....9*****************************9887666543.666778999986 PP
2	trihelix	91.5	8.8e-29	507	602	1	86
trihelix 1 rWtkqevlaLiearr...........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r +e l +++ k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql PON87121.1 507 RWPRDEVLALINLRCsfyssgdqpdhHKEGILASSSVKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKHVNKKR-SVDSRTCPYFHQLS 602 8***********9777777777666666666778*****************************************8.78889*****95 PP

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence
MFNGGVPDQL HQFIASSRPN SVVLPLSSSS SSSYPNSIDI HANYTHESHQ LLPLQPHFLH 60 PLLHQVHHKN NISHHDEHHK EEDATATAAA ATAAANNLVS DVGLDMMESP RSIAELIPAV 120 DLHHHHHPWS NDEVLALLRV RSTMDNWFPD VTWEHVSRKL AELGFKRSAE KCKEKFEEES 180 SYFNNNNNNH NINNNCTKNY RLFHHHQLSE LEQLYHGENQ AQHHQNHNTM GAQKDQRVAE 240 NPSELDKRRG QSLEEVDLDS TRNETVVLVG GISTKDSDEA EKVVEVSKSG TNINKKRKRS 300 SSSSHENNKM KFDMFKGFCE EIVKKMMAQQ EEMHNKLLED MVKRDQEKVA KEEAWKKQEM 360 DRMNKELEIM AHEQAMAGDR QASIIDFLNK FTSNSADQTP KPKSTGKDIS LTSSSSSSFV 420 LQFQPHDHQQ SPIITPTISH LEKNQTSKNN DNINTHDQQP SSSSKNPSTT YNIVSTPPAK 480 PTPATSSSNK TQNPIPINND KEDLGKRWPR DEVLALINLR CSFYSSGDQP DHHKEGILAS 540 SSVKAPLWER ISQGMLELGY KRSAKRCKEK WENINKYFRK TKHVNKKRSV DSRTCPYFHQ 600 LSTLYNKGTT LVSSSLHHQQ GQEISDHNIS AMFPPETSQL IIRSDHPVLH DNDDDHHDHH 660 NHDSSSHVVH VADQGERSGN NVIVHDHHQE VVPAGFDFEF

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence

MFNGGVPDQL HQFIASSRPN SVVLPLSSSS SSSYPNSIDI HANYTHESHQ LLPLQPHFLH  60
PLLHQVHHKN NISHHDEHHK EEDATATAAA ATAAANNLVS DVGLDMMESP RSIAELIPAV  120
DLHHHHHPWS NDEVLALLRV RSTMDNWFPD VTWEHVSRKL AELGFKRSAE KCKEKFEEES  180
SYFNNNNNNH NINNNCTKNY RLFHHHQLSE LEQLYHGENQ AQHHQNHNTM GAQKDQRVAE  240
NPSELDKRRG QSLEEVDLDS TRNETVVLVG GISTKDSDEA EKVVEVSKSG TNINKKRKRS  300
SSSSHENNKM KFDMFKGFCE EIVKKMMAQQ EEMHNKLLED MVKRDQEKVA KEEAWKKQEM  360
DRMNKELEIM AHEQAMAGDR QASIIDFLNK FTSNSADQTP KPKSTGKDIS LTSSSSSSFV  420
LQFQPHDHQQ SPIITPTISH LEKNQTSKNN DNINTHDQQP SSSSKNPSTT YNIVSTPPAK  480
PTPATSSSNK TQNPIPINND KEDLGKRWPR DEVLALINLR CSFYSSGDQP DHHKEGILAS  540
SSVKAPLWER ISQGMLELGY KRSAKRCKEK WENINKYFRK TKHVNKKRSV DSRTCPYFHQ  600
LSTLYNKGTT LVSSSLHHQQ GQEISDHNIS AMFPPETSQL IIRSDHPVLH DNDDDHHDHH  660
NHDSSSHVVH VADQGERSGN NVIVHDHHQE VVPAGFDFEF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	295	300	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	1e-106	Trihelix family protein