PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON87008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C3H
Protein Properties Length: 308aa    MW: 34815.9 Da    PI: 9.2147
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON87008.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH474.1e-15238263126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +ktelC+ +++tG+C+yGd C+FaHg
  PON87008.1 238 FKTELCNKWQETGECPYGDHCQFAHG 263
                 79***********************8 PP

2zf-CCCH18.53.5e-06276300125
                 --S---SGGGGTS.--TTTTT-SS-S CS
     zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                 ykt  Cr  +  G  C+yG rC+F H
  PON87008.1 276 YKTQVCRMVLN-GvVCPYGHRCHFLH 300
                 78888888888.669*********** PP

Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MQKNLATMTS SSSISHGVVS SNSFFLDSDS SSTIAAAAAA IDDHRRRLYH SLLVQDHQEM  60
VNRRSLCLNR LRQVAAEAGD LRRENSHLRS VNVELNKQLR LLIQSTLRNQ NRSPGSRTYT  120
TGSTRFWDRE EGSHGHERES QIRTGVNGIR AENSAELLDM YSRLPKSISV KCDDYLELEA  180
QGAIVNNGGR SRDSTRFRTS SLQNVKQKVY VGGGGKKGNY HHGHEDPVEL EVYKQGTFKT  240
ELCNKWQETG ECPYGDHCQF AHGIDELRPV IRHPRYKTQV CRMVLNGVVC PYGHRCHFLH  300
ALSDHKAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.19e-51C3H family protein