PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON86822.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 296aa    MW: 32538.2 Da    PI: 10.4544
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON86822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF671.9e-214287449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 n+sn qvtfskRr g++KKA+EL++LC+ae a+i+fs+  k++ +
  PON86822.1 42 TNESNLQVTFSKRRSGLFKKASELCTLCGAEMAIIVFSPGRKVFSF 87
                699************************************9999877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
METPKPKPNP IPSPNPNPNP NSSDPNKKAS RGRQKVEMVK MTNESNLQVT FSKRRSGLFK  60
KASELCTLCG AEMAIIVFSP GRKVFSFGHP NVEFVIDRFM NRNQPAPTTV TTGTMRLIEA  120
HRNANVRELN QQLMQVLGQL DLEKKRAEEL KKARKASQAE CWWEGPLETL DLKQLEQLKT  180
AMEELKKTVT QQADRLLIQT TSSNTLLSPN FNINNTNNNN AGPFFVGGGS SSSIGGGVMV  240
PFEQVAKSII NNNINYTNAR FDQASTSTVN PAMPLQLPAP LQVPAPAPVP VRSTAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-62M-type_MADS family protein