PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON86592.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 676aa MW: 73515.8 Da PI: 7.4482

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON86592.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.5	1.9e-07	273	293	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg PON86592.1 273 PCPEFRK-GSCQKGDACEYAHG 293 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MCSGSKNKLN NNPSKVIMDS GFPKQKDGGF QSEYSVLLEL SASDDLDVFR RTVEEKGINV 60 VDQSSFWYGR RIGSKKMGFE ERTPLMIAAL FGSTKVLKYI IESGKVDVNR ACGSEQVTAL 120 HCATAGGSSS SLDVVKLLLE ASADADLVNA NGCKPIDLLA PGWKAPCGSR KRAIESMLKG 180 ETNSVTEEEE DELKVGSPLA SKEGAEKKEY PIDVSLPDIN NGVYGTDDFR MYSFKIKPCS 240 RAYSHDWTEC PFVHPGENAR RRDPRKYPYS CVPCPEFRKG SCQKGDACEY AHGVFESWLH 300 PAQYRTRLCK DETGCTRKVC FFAHKHEELR PVYASTGSAM PSPRSLAVSA ADMATLSPLS 360 LGQPSMPLPA TSTPPMSPLA ASSSPKNGGL WQNKVNLTPP ALQLPGSRLK TALCARDLGL 420 EMELLGLDSH TSQQQQQQLL EEISRLSSPS YLKPTNLDDV FGSLDPSVLS QMQGLSFKAS 480 TPTQLQSPTG LQIRQNMSQL RASYPTNLSS SPVRKPTSFG FDSSSSVAAA VMNSRSAAFA 540 KRSQSFIDRG AANHLGFTAA ANSASMMSSS SLSGWSSPDG KLDWAVQGDE LNKLKKSASF 600 GFRNSNGGTA TTALRPSTID EPDVSWVHSL VKDVSSERSG LFDAEKQHHY NPNKGVHEVL 660 PPWVEQLYIE QEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MCSGSKNKLN NNPSKVIMDS GFPKQKDGGF QSEYSVLLEL SASDDLDVFR RTVEEKGINV  60
VDQSSFWYGR RIGSKKMGFE ERTPLMIAAL FGSTKVLKYI IESGKVDVNR ACGSEQVTAL  120
HCATAGGSSS SLDVVKLLLE ASADADLVNA NGCKPIDLLA PGWKAPCGSR KRAIESMLKG  180
ETNSVTEEEE DELKVGSPLA SKEGAEKKEY PIDVSLPDIN NGVYGTDDFR MYSFKIKPCS  240
RAYSHDWTEC PFVHPGENAR RRDPRKYPYS CVPCPEFRKG SCQKGDACEY AHGVFESWLH  300
PAQYRTRLCK DETGCTRKVC FFAHKHEELR PVYASTGSAM PSPRSLAVSA ADMATLSPLS  360
LGQPSMPLPA TSTPPMSPLA ASSSPKNGGL WQNKVNLTPP ALQLPGSRLK TALCARDLGL  420
EMELLGLDSH TSQQQQQQLL EEISRLSSPS YLKPTNLDDV FGSLDPSVLS QMQGLSFKAS  480
TPTQLQSPTG LQIRQNMSQL RASYPTNLSS SPVRKPTSFG FDSSSSVAAA VMNSRSAAFA  540
KRSQSFIDRG AANHLGFTAA ANSASMMSSS SLSGWSSPDG KLDWAVQGDE LNKLKKSASF  600
GFRNSNGGTA TTALRPSTID EPDVSWVHSL VKDVSSERSG LFDAEKQHHY NPNKGVHEVL  660
PPWVEQLYIE QEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein