PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON86565.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | LBD | ||||||||
Protein Properties | Length: 182aa MW: 19804.5 Da PI: 8.5847 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.4 | 7.4e-41 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+l+r+C++ C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l+ ela++++ PON86565.1 12 SCAACKFLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQRELAVARA 110 6**********************************************************************************************9987 PP DUF260 100 e 100 + PON86565.1 111 R 111 5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence |
MKGGHEPRSS SSCAACKFLK RRCTPTCIFA PYFRSDEPKK FAKVHKVFGA SNVSKILIEV 60 PEEQREDTVN SLAYEAEARL RDPVYGCIGA IALLQRKMVE LQRELAVARA RLARFAATSS 120 SSSSSSYSPI LDGRLISEAA FSGLPAACAG LNSTNDGLIS QSSFEFGQNG SIYDFSFVPY 180 IL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 2e-57 | LBD family protein |