PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON86459.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family HSF
Protein Properties Length: 336aa    MW: 36482.4 Da    PI: 4.5036
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON86459.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91e-35291202102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++li w+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ Fk+g+k ll++i+
    PON86459.1  29 FLTKTYQLVDDPAVDDLIAWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFKRGEKGLLRDIQ 116
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    PON86459.1 117 RRKI 120
                   *985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MAPLPVEQTG ESGHSGGGGD SQRTLPTPFL TKTYQLVDDP AVDDLIAWND DGSTFIVWRP  60
AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVVPDRWEFA NDCFKRGEKG LLRDIQRRKI  120
SPAGAAAAGA SAVTVAAVPV AALVSPSNSG DEQVISSNSS PVAAPVAAAA LHRTTSCTTA  180
PELLEENERL RRENSQLSNE LTQLRGLCNN ILTLMTNFAS SQIDTGGGGG VPEGRPLEFM  240
QAPEDAAVVG GATAGPNPEA VEEEDEDEEM RPRLFGVSIG VKRVRRDEEE EAMEEEQSQN  300
HLQPVVRELG RAVKSEPPNT NSSERNQDPS WLELGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.17e-85HSF family protein