PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON86201.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C3H
Protein Properties Length: 384aa    MW: 41853.9 Da    PI: 7.8634
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON86201.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.7e-07137157526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C+ f++ G Ck Gd+C FaHg
  PON86201.1 137 ACPEFRK-GNCKSGDSCEFAHG 157
                 7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    
MMIGEPTRLN PTVQIPTWDP YDDPTAGVAS PFSVTSPSVN VNGNVATGDY SPFLDSFASL  60
HRYLPSNEFV PGESDSLSEE SDAHVDAFSC DHFRMFEFKV RRCARGRSHD WTECPFAHPG  120
EKARRRDPRK HHYSGTACPE FRKGNCKSGD SCEFAHGVFE CWLHPARYRT QPCKDGLSCR  180
RRVCFFAHTP EQLRVLPNQS PRTSGSGESF DGSPIRHAFD SYLAKGGFVS SPTSILTSPP  240
VSPPSDSPPA SPNSPQIGVG SFNSASELVA SMRNLQLGKI KLGSPPPWGF QMGSGFGSPR  300
GGSMLRPGIC SVPSTPTRNP ITPRVGSVDL WDQSCVEEPA MERVESGRNI RAKMYAKLSK  360
ENSLGRVDSA ASAPDVGWIS ELVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-123C3H family protein