PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON86044.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 335aa MW: 37651.2 Da PI: 4.3692 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 95 | 148 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k PON86044.1 95 KKRRLTVDQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 148 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.2 | 4e-42 | 95 | 184 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl+ +qv++LE+sFe e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkq+Ekdy++L+++y++lk++ e+L+ke+++L++e+ PON86044.1 95 KKRRLTVDQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQMEKDYDVLQASYNSLKADYESLRKETDKLKAEV 184 9**************************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence |
MAGGRVYGGG NGSSSLSVLL QNQRGSSGSE PLDSLFFSGS CNSSTSSSFL GSRSMMSFED 60 FHGGNGSNKS FFRSFGSDEI GLDDDLDEYF HQPGKKRRLT VDQVQFLEKS FEVENKLEPE 120 RKVQLAKDLG LQPRQVAIWF QNRRARWKTK QMEKDYDVLQ ASYNSLKADY ESLRKETDKL 180 KAEVLVLSDE LLKREKEKES NSELSDNSNK LSEEPVEKPL AESASEGEVS KVSTVLCHQE 240 DISSVKSDIF DSDSPRLTDG VHSNPLMEPG DSSYAFEADQ SDLSQDEEDK LISRSFLPSG 300 YVFPKLEDVD YSDPPESSCN FEYPVEDHAF WSWSY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 10 | GGRVYGGG |
2 | 143 | 151 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 3e-45 | HD-ZIP family protein |