PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON85952.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 271aa MW: 31379.6 Da PI: 6.6506 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.4 | 3.9e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+ rqvtf+kRr+g+lKK +ELSvLCda++ +iifss+gklyey+s PON85952.1 10 RIENKTTRQVTFAKRRAGLLKKTHELSVLCDAQIGLIIFSSNGKLYEYCS 59 9***********************************************96 PP | |||||||
2 | K-box | 67.2 | 5.4e-23 | 72 | 170 | 2 | 99 |
K-box 2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 q ++g++ ++++++e+l+ e++++k+ ++nLq ++ ++ GedL+sLsl eL++Le+ Le+s +k+R++K +ll +++e+l++ke +l+++n+ L + ++ PON85952.1 72 QLATGTQiVQQSEMEQLCGEVRRIKSDTHNLQLSLQRYTGEDLSSLSLGELNELEDMLEHSTQKVRNRKFDLLQQKTENLKRKETMLEKDNEHLFHLIK 170 55677778999*********************************************************************************9987666 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence |
MGRGKITIAR IENKTTRQVT FAKRRAGLLK KTHELSVLCD AQIGLIIFSS NGKLYEYCSD 60 TSSMENMIKR YQLATGTQIV QQSEMEQLCG EVRRIKSDTH NLQLSLQRYT GEDLSSLSLG 120 ELNELEDMLE HSTQKVRNRK FDLLQQKTEN LKRKETMLEK DNEHLFHLIK EHQVAAASFE 180 HHHHQAEQVT NMNVSKMEED GRIDINHHMN MNMNMNMNMN MNVNVNVLDQ FPFAGEEQPN 240 SVLQLATLQP PSFYPYRLLP TQPNLQDYSL D |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 1e-47 | MIKC_MADS family protein |