PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON85393.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family HD-ZIP
Protein Properties Length: 815aa    MW: 90031.9 Da    PI: 5.8262
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON85393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-2089144156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  PON85393.1  89 KKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 144
                 688899***********************************************998 PP
2START152.24.3e-482905192206
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..............dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                 la +  +elvk+ ++++p+W +    eng evl  +e ++               +++ea r+++vv+m++ +lv  +ld + +W   ++    +a+tl
  PON85393.1 290 LAMSSVNELVKMCQSGSPLWIRNG--ENGREVLNVEEHARMfqwamnlkqhdssgFKTEATRDTAVVIMNSITLVDAFLDGN-KWMDLFPsivsRAKTL 385
                 5677899**************999..********99998889****************************************.99999999999***** PP

                 EEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
       START  83 evissg.......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvd 171
                 +vi+++       g lqlm+aelq+lsplvp R+  f+Ry++q  ++g+wv+vd  vds  +  + ++s+ R +++pSg++i++++ng+s+vtwveh++
  PON85393.1 386 QVITTDasgqplnGSLQLMFAELQFLSPLVPsREAHFLRYCQQnAEEGTWVVVDFPVDSFHDILQyQPSLPRYRRRPSGCVIQDMPNGYSRVTWVEHAE 484
                 ***********************************************************9999889********************************* PP

                 --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                  +++ +h  +  +v+sg+a+ga +w+a l+rqc++
  PON85393.1 485 IEEKPVHPTFSNFVHSGMAFGAHRWLAVLKRQCQR 519
                 *********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    
MSSIGGNVVS SETLFSSPIQ NPNFNFMSTM PYQPFSSILP SKDENGLLLR GKEEMLDSGS  60
GSEQMEDKSG NEQENSSDQL LLQQQQGKKK RYHRHTARQI QEMEALFKEC PHPDDKQRMK  120
LSQELGLKPR QVKFWFQNRR TQMKAQQDRS DNVILRAEND SLKNENYRLQ AALRNIMCPN  180
CGGQAMIGEI GLDEQQLRLE NARLREELDR VCCLTSRYTG RSIQTMTPAA HHPLMPPSLD  240
LDMNMYSRHF PDPMGSCNDH NMVPIPMLPQ EPFPDNGLLL EEEKTMAIEL AMSSVNELVK  300
MCQSGSPLWI RNGENGREVL NVEEHARMFQ WAMNLKQHDS SGFKTEATRD TAVVIMNSIT  360
LVDAFLDGNK WMDLFPSIVS RAKTLQVITT DASGQPLNGS LQLMFAELQF LSPLVPSREA  420
HFLRYCQQNA EEGTWVVVDF PVDSFHDILQ YQPSLPRYRR RPSGCVIQDM PNGYSRVTWV  480
EHAEIEEKPV HPTFSNFVHS GMAFGAHRWL AVLKRQCQRV ASLMARNISD VGVIPSPEAR  540
KNLMKLAQRM IRTFCVNIST SGGQSWTALS DSPDDTVRIT TRRITEPGQP NGLILSAVST  600
TWLPYPHYLV FDLLRDERRR SQLEVLSNGN SLQEVAHIAN GSDPGNCVSL LRINVASNSS  660
QHVELMLQES CTDQSGSLVV CATVDVDAIQ LTMSGEDPSC IPILPLGFVI VPVEVSSDEN  720
SPAANGSSPV PASVSGKPSC LLTVGLQVLV STLPSANPSL PSINAINNHL NNTVQQIMAA  780
LGGGTSTASA GVDNGGSGSS SGADLGTTTN AVPKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein