PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON85271.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 539aa MW: 58207.8 Da PI: 5.0286

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON85271.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.9	3.5e-13	195	217	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f+++tGtCk+G++CkF+H+ PON85271.1 195 EDCSFYLKTGTCKFGSNCKFNHP 217 89********************9 PP
2	zf-CCCH	27.1	7.4e-09	241	264	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 ++ +C++++r+G Ck+G Ck++H PON85271.1 241 GQTECKYYLRSGGCKFGKACKYNH 264 6789******************** PP
3	zf-CCCH	40.7	4e-13	291	314	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++++rtG CkyG++C+F+H+ PON85271.1 291 EKECPYYMRTGSCKYGANCRFNHP 314 679********************9 PP
4	zf-CCCH	25.7	2e-08	426	452	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +f++tG Ck+ ++Ck++H++ PON85271.1 426 PGQPECTYFLKTGDCKFKSNCKYHHPK 452 5789*********************96 PP
5	zf-CCCH	31.8	2.5e-10	474	497	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C++++r+G+Ck+G+ Ck+ H+ PON85271.1 474 QNVCSHYSRYGICKFGPACKYDHP 497 568********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MEHSEQISVT QNDAVLGFQR SPSPSSSSVN GDHPDPATSD LGHGAAEESG GDPLHEELGN 60 LVLKDEKEED PVPKWDLDPE EKEEERVFEK DLSGGEIGSR NGSEDENENE NENGKGKEVE 120 EEGSDGGDGG GGGGGGVEGE WEGWDENKNG NESENCNEVN NGLGGGGGGV EVEKKNGLGG 180 GGTRKYQYPV RPEAEDCSFY LKTGTCKFGS NCKFNHPVRR KPNQGAKEKV KEREESLEKP 240 GQTECKYYLR SGGCKFGKAC KYNHTRGKTS VAALALALEL NFVGLPIRVG EKECPYYMRT 300 GSCKYGANCR FNHPDPTDAA GGDTSAGYGN SGHVSLQGAS QSTIPSWSSP RSLNETAPFV 360 PLMLSPTQGV PSQNPEWNGY QAPVFLPERN LPPPPPAFVM NNPVTETNIY PHHPPQKQVE 420 EYPERPGQPE CTYFLKTGDC KFKSNCKYHH PKRTATGAPP TVLSDKGLPL RPDQNVCSHY 480 SRYGICKFGP ACKYDHPAQP TSTISGVENQ PPYGNSVATA EGAGLTRRSR SETTIPQLV

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MEHSEQISVT QNDAVLGFQR SPSPSSSSVN GDHPDPATSD LGHGAAEESG GDPLHEELGN  60
LVLKDEKEED PVPKWDLDPE EKEEERVFEK DLSGGEIGSR NGSEDENENE NENGKGKEVE  120
EEGSDGGDGG GGGGGGVEGE WEGWDENKNG NESENCNEVN NGLGGGGGGV EVEKKNGLGG  180
GGTRKYQYPV RPEAEDCSFY LKTGTCKFGS NCKFNHPVRR KPNQGAKEKV KEREESLEKP  240
GQTECKYYLR SGGCKFGKAC KYNHTRGKTS VAALALALEL NFVGLPIRVG EKECPYYMRT  300
GSCKYGANCR FNHPDPTDAA GGDTSAGYGN SGHVSLQGAS QSTIPSWSSP RSLNETAPFV  360
PLMLSPTQGV PSQNPEWNGY QAPVFLPERN LPPPPPAFVM NNPVTETNIY PHHPPQKQVE  420
EYPERPGQPE CTYFLKTGDC KFKSNCKYHH PKRTATGAPP TVLSDKGLPL RPDQNVCSHY  480
SRYGICKFGP ACKYDHPAQP TSTISGVENQ PPYGNSVATA EGAGLTRRSR SETTIPQLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-134	C3H family protein