PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON85271.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C3H
Protein Properties Length: 539aa    MW: 58207.8 Da    PI: 5.0286
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON85271.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.93.5e-13195217426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 e C+f+++tGtCk+G++CkF+H+
  PON85271.1 195 EDCSFYLKTGTCKFGSNCKFNHP 217
                 89********************9 PP

2zf-CCCH27.17.4e-09241264225
                 -S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                 ++ +C++++r+G Ck+G  Ck++H
  PON85271.1 241 GQTECKYYLRSGGCKFGKACKYNH 264
                 6789******************** PP

3zf-CCCH40.74e-13291314326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 +++C++++rtG CkyG++C+F+H+
  PON85271.1 291 EKECPYYMRTGSCKYGANCRFNHP 314
                 679********************9 PP

4zf-CCCH25.72e-08426452127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C +f++tG Ck+ ++Ck++H++
  PON85271.1 426 PGQPECTYFLKTGDCKFKSNCKYHHPK 452
                 5789*********************96 PP

5zf-CCCH31.82.5e-10474497326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 +  C++++r+G+Ck+G+ Ck+ H+
  PON85271.1 474 QNVCSHYSRYGICKFGPACKYDHP 497
                 568********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    
MEHSEQISVT QNDAVLGFQR SPSPSSSSVN GDHPDPATSD LGHGAAEESG GDPLHEELGN  60
LVLKDEKEED PVPKWDLDPE EKEEERVFEK DLSGGEIGSR NGSEDENENE NENGKGKEVE  120
EEGSDGGDGG GGGGGGVEGE WEGWDENKNG NESENCNEVN NGLGGGGGGV EVEKKNGLGG  180
GGTRKYQYPV RPEAEDCSFY LKTGTCKFGS NCKFNHPVRR KPNQGAKEKV KEREESLEKP  240
GQTECKYYLR SGGCKFGKAC KYNHTRGKTS VAALALALEL NFVGLPIRVG EKECPYYMRT  300
GSCKYGANCR FNHPDPTDAA GGDTSAGYGN SGHVSLQGAS QSTIPSWSSP RSLNETAPFV  360
PLMLSPTQGV PSQNPEWNGY QAPVFLPERN LPPPPPAFVM NNPVTETNIY PHHPPQKQVE  420
EYPERPGQPE CTYFLKTGDC KFKSNCKYHH PKRTATGAPP TVLSDKGLPL RPDQNVCSHY  480
SRYGICKFGP ACKYDHPAQP TSTISGVENQ PPYGNSVATA EGAGLTRRSR SETTIPQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-134C3H family protein