PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON84657.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

LBD

Protein Properties

Length: 316aa MW: 34026.4 Da PI: 7.8827

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON84657.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.7	2.8e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe++r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q+++e+ PON84657.1 4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHHRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWHLCQAAVEA 102 6*************************************************************************************************9 PP DUF260 95 allke 99 +l ++ PON84657.1 103 VLKGA 107 98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 HRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV EAVLKGAPIT PVTSEAAVSS 120 HGPPLKAYDI RHVSKDENSA ASNDPTVQPR VAKTRCRLKR TVVKPKARKA STGFELETRC 180 DATQSKWADY CADELNRSTS HDSSVSHLSD AAPNVDGESK ETETSMVSVE TAEASLLFRA 240 EPESAAKPDN ESAMRDNELA LELTLGFEPA PHARHVVPVK KRRIEASGYG GGRGGGAAAT 300 SEDGACKIEL GLEYSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-97	LBD family protein