PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON83861.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family HD-ZIP
Protein Properties Length: 773aa    MW: 83995 Da    PI: 6.124
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON83861.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-20100155156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  PON83861.1 100 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 155
                 688999***********************************************999 PP
2START222.21.6e-692915111206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela +a++el+++a+ +ep+W++s       +n+de++++f+++ +     ++ ea+r++ vv+m++ +lve+l+d + qW++ +     +a+ lev+s
  PON83861.1 291 ELAVAAMEELIRMAQMGEPLWMTSLdgasAVLNEDEYIRTFPRGIGpkpagFKCEASRETSVVIMNHINLVEILMDLS-QWSTVFSgivsRAMALEVLS 388
                 57899********************999999************999********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d+ ++ p     vR++++pSg+li++++ng+skvtwvehv++++r +h
  PON83861.1 389 TGvagnfnGALQVMTAEFQVPSPLVPtRESYYVRYCKQHADGTWAVVDVSLDNLRPSPA----VRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVH 483
                 ********************************************************995....************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +l+++lv+sg+a+gak+wvatl+rqce+
  PON83861.1 484 NLYKQLVNSGHAFGAKRWVATLDRQCER 511
                 **************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    
MPAGIMIPAR NMPSMVGRNG NISGFGSSSG LTIGQPNMME GGHQLHHPLD MAAQNTTSES  60
DINARLGRDD DVFDSATKSG SENQEGGASG DDQDQQRPKK KRYHRHTQHQ IQEMEAFFKE  120
CPHPDDKQRK ELSRELGLEP LQVKFWFQNK RTQMKTQHER HENTQLRTEN EKLRADNMRY  180
REALSNASCP NCGGPTAIGE MSFDEHHLRL ENARLREEID RISAIAAKYV GKPVVNYPLL  240
SSPVPPRPLE LGVGNFGPQA GMGGEMYGGA TGDLLRPMSA PNEADKPMVI ELAVAAMEEL  300
IRMAQMGEPL WMTSLDGASA VLNEDEYIRT FPRGIGPKPA GFKCEASRET SVVIMNHINL  360
VEILMDLSQW STVFSGIVSR AMALEVLSTG VAGNFNGALQ VMTAEFQVPS PLVPTRESYY  420
VRYCKQHADG TWAVVDVSLD NLRPSPAVRC RRRPSGCLIQ EMPNGYSKVT WVEHVEVDDR  480
GVHNLYKQLV NSGHAFGAKR WVATLDRQCE RLASAMATNI PTGDVGVITN QDGRKSMLKL  540
AERMVISFCA GVSASTTHTW TTLSGTGADD VRVMTRKSVD DPGRPPGIVL SAATSFWLPV  600
PPKRVFDFLR DENSRSEWDI LSNGGVVQEM AHIANGRDTG NCVSLLRVNS ANSSQSNMLI  660
LQESCTDQTA SFVIYAPVDI VAMNVVLNGG DPDYVALLPS GFAIFPDGSA AHGSGGGIGE  720
PGSTGGSLLT VAFQILVDSV PTAKLSLGSV ATVNNLIACT VERIKASLSC ETA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0HD-ZIP family protein