PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON83007.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

SBP

Protein Properties

Length: 550aa MW: 60161.1 Da PI: 7.4437

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON83007.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.4	1.5e-41	174	249	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls++k+yh+rhkvCe+hsk+++v+v+++eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q PON83007.1 174 CQVYGCNKDLSSCKDYHKRHKVCEIHSKTAKVIVNNMEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 249 **************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MESWSYVSEG KGYVSEETIS PFNSLGRSKN ALLGWDVKNP CTFGNNMLVS SQQGIENQGF 60 GEYIDMMGKQ VASNSVGDVL TDSKVCGGKL IDPTIAVAFS GEDESTSRIS SSILDSSSWD 120 SSLIDLKLGN IGDRRDICGS KVSKGAPAGL SSSESSTPPK RIRLSGLNSQ TSFCQVYGCN 180 KDLSSCKDYH KRHKVCEIHS KTAKVIVNNM EQRFCQQCSR FHLLAEFDDG KRSCRKRLAG 240 HNERRRKPQA GIHSGRAGRM LQSYDDSRFQ GTASFICQDI LPSGIFNPDK YGTSNWCGRI 300 KVEDGSDYRP LSTVPVTNEH PRSKMHFPRD IGKQFPSFHE SRANAVTANV FSLHSSHYQH 360 ELGGPDSSSR PFFHNNILGC EDFNNFSTAS TIQGFSGTSD SGCALSLLSS QSQNSSSHLS 420 GIPMARPLDK QGSHTCYNMS QVFGKLVGAS SQASTSGVLN KIPSLGMNTM DGSQLSPIMI 480 SDGADNVNFE ITDGIFQGSD FLNSKNRLSC EDGPTIDLLQ LSSQLQRVED QRQTMQMEQK 540 NDAFCCLRIT

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MESWSYVSEG KGYVSEETIS PFNSLGRSKN ALLGWDVKNP CTFGNNMLVS SQQGIENQGF  60
GEYIDMMGKQ VASNSVGDVL TDSKVCGGKL IDPTIAVAFS GEDESTSRIS SSILDSSSWD  120
SSLIDLKLGN IGDRRDICGS KVSKGAPAGL SSSESSTPPK RIRLSGLNSQ TSFCQVYGCN  180
KDLSSCKDYH KRHKVCEIHS KTAKVIVNNM EQRFCQQCSR FHLLAEFDDG KRSCRKRLAG  240
HNERRRKPQA GIHSGRAGRM LQSYDDSRFQ GTASFICQDI LPSGIFNPDK YGTSNWCGRI  300
KVEDGSDYRP LSTVPVTNEH PRSKMHFPRD IGKQFPSFHE SRANAVTANV FSLHSSHYQH  360
ELGGPDSSSR PFFHNNILGC EDFNNFSTAS TIQGFSGTSD SGCALSLLSS QSQNSSSHLS  420
GIPMARPLDK QGSHTCYNMS QVFGKLVGAS SQASTSGVLN KIPSLGMNTM DGSQLSPIMI  480
SDGADNVNFE ITDGIFQGSD FLNSKNRLSC EDGPTIDLLQ LSSQLQRVED QRQTMQMEQK  540
NDAFCCLRIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	6e-47	SBP family protein