PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON82958.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 743aa    MW: 80228.6 Da    PI: 5.9081
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON82958.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS335.31.1e-1023897421374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+++L ++Ae +++g+  laq +Larl++++sp g+p+qR+a+yf+eAL+  l++       +l+  + +    + ++ a+k+fse+sP+l+f+++t+N
  PON82958.1 389 LIDQLSKAAELIETGNPVLAQGILARLNHHVSPLGKPFQRAAFYFKEALELLLHN-------SLALPPFN---LIFKIGAYKTFSEISPVLQFANFTCN 477
                 5789**************************************************9.......56666665...89************************ PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle..leeLrv 196
                 qaIlea+eg  r+H+iDfdi++G+QW++++q+La R++g+ sl+iT+++sp+++++ el  t+e+L++fA+el++ fe +++ + +l +    +  L++
  PON82958.1 478 QAILEAMEGFGRIHVIDFDIGYGGQWASFMQELALRNGGAGSLKITAFASPSTHDEFELGFTQENLKHFAAELNLAFELEIV-SVELLNSGswPLPLHI 575
                 *********************************************************************************6.4444444401456799 PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 ++gEa+aVnl +  ++ +  ++sl+     vL++vk+lsPkvvv  e+ +d+++ +F  ++++a++ ys l++sl+a    + ++ +k+E++ll++ i+
  PON82958.1 576 SEGEAIAVNLPIGSFSSY--PLSLPL----VLRFVKQLSPKVVVSLERGCDRTDVPFPLQIIHAFHSYSGLLESLDAV-NVNLDALQKIEKFLLQPGIE 667
                 9***********999888..777777....*********************************************665.3566999************* PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 + v  ++++      +   Wr+ + ++GF+p+++s+++++qa++l+++++++g++ve+++ sl l+W++++L+s+SaWr
  PON82958.1 668 KTVLSRHRS----PDRTPPWRSSFLNSGFSPLTFSNFTESQAECLVQRTPVRGFHVEKKQSSLALCWQRKELISASAWR 742
                 ****99998....89999************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    
MKAMPLPFEE FQGKGVLDFF SSSSTASDSL LSLQQQRPRK WNALISKENC YVGSEPTSVL  60
DTRRSPSPPR STSTLSSSLG SSGCGGGGGG NGGGTGSTDT TTITGVAAAA ASETPSGAGA  120
ALEEETCGLG MEDWESVLSE SPGQEQSIMR LIMADVDDPS LGLNKLLQSG SVSQEMEFNA  180
GGFGVVDQGF GFEPNGGNLV GSVIDPSGQG TTCSGFPFNS ATPNAHNNNT RHGSASNPIN  240
PMFSASANSL LPVSLSPLAF HQQQQQQQQL VESMDAKPQV FNPQVVINQN QANMAQNPAL  300
VMPLTYAQLQ EHHVISQPPA KRLNTSAVGP NYQVQKVQFP SSGQEVFIRG QEQQLQLLHQ  360
RPTMAGAKQK MMSPGAGDEL ANHQLQHALI DQLSKAAELI ETGNPVLAQG ILARLNHHVS  420
PLGKPFQRAA FYFKEALELL LHNSLALPPF NLIFKIGAYK TFSEISPVLQ FANFTCNQAI  480
LEAMEGFGRI HVIDFDIGYG GQWASFMQEL ALRNGGAGSL KITAFASPST HDEFELGFTQ  540
ENLKHFAAEL NLAFELEIVS VELLNSGSWP LPLHISEGEA IAVNLPIGSF SSYPLSLPLV  600
LRFVKQLSPK VVVSLERGCD RTDVPFPLQI IHAFHSYSGL LESLDAVNVN LDALQKIEKF  660
LLQPGIEKTV LSRHRSPDRT PPWRSSFLNS GFSPLTFSNF TESQAECLVQ RTPVRGFHVE  720
KKQSSLALCW QRKELISASA WRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-150GRAS family protein