PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON82936.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 372aa MW: 42228.3 Da PI: 4.6828

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON82936.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00041	257	279	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H PON82936.1 257 YKCETCKKVFRSYQALGGHRASH 279 9***********99999998887 PP
2	zf-C2H2	11.4	0.001	321	343	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H PON82936.1 321 HECPVCFRVFSSGQALGGHKRSH 343 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MKEIDQANKQ GVEESPPPPQ TQPPAPPLPP PSLPPELSDS AGLASSSSSS SSEEEEETED 60 RELGSEDEKG LYYGLRENPK RSIKLVDPEF SFAVDAGSVI LQDRESETES SKNPTRRRSK 120 RTRKSGMLFE HHHLHYQPQY QKFDHHNQEE TESLKKIKLS KLSRTESWAE PEPVSSVSDA 180 TTEEDVAFCL MMLSRDKWKR QEKNQQRVQE DEEQREEEEE GEEEEEEEEE ERSMEESDES 240 EELKSSRTNV IRTRGKYKCE TCKKVFRSYQ ALGGHRASHK KIKASNNVRI DEAHESMEQD 300 IAGTTAATTA STLMVVEKKI HECPVCFRVF SSGQALGGHK RSHVTAPVDD DELSQIELSA 360 VSDAEFVNPI RH

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MKEIDQANKQ GVEESPPPPQ TQPPAPPLPP PSLPPELSDS AGLASSSSSS SSEEEEETED  60
RELGSEDEKG LYYGLRENPK RSIKLVDPEF SFAVDAGSVI LQDRESETES SKNPTRRRSK  120
RTRKSGMLFE HHHLHYQPQY QKFDHHNQEE TESLKKIKLS KLSRTESWAE PEPVSSVSDA  180
TTEEDVAFCL MMLSRDKWKR QEKNQQRVQE DEEQREEEEE GEEEEEEEEE ERSMEESDES  240
EELKSSRTNV IRTRGKYKCE TCKKVFRSYQ ALGGHRASHK KIKASNNVRI DEAHESMEQD  300
IAGTTAATTA STLMVVEKKI HECPVCFRVF SSGQALGGHK RSHVTAPVDD DELSQIELSA  360
VSDAEFVNPI RH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	158	RRSKRTRKSGMLFEHHHLHYQPQYQKFDHHNQEETESLKKIK
2	120	161	RRSKRTRKSGMLFEHHHLHYQPQYQKFDHHNQEETESLKKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	8e-43	C2H2 family protein