PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON82610.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

HD-ZIP

Protein Properties

Length: 356aa MW: 39108.3 Da PI: 6.8698

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON82610.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.9	1.5e-17	177	231	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k PON82610.1 177 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 231 788899***********************************************98 PP
2	HD-ZIP_I/II	128.1	3.6e-41	177	267	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk PON82610.1 177 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-ALK 267 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MELGLSLGDP PKPPFGFIEK HQTNDDKPSA FCMDLSIGPL RTRTGDDING RRDQPDELTH 60 REQQRPDEIP RKSGSSSSEP PVQLDLLPHA PGGGLLELNR VPKVVVPTGE EEAADETAAL 120 SSSPNSNSGG TSSFQMDIGL YSYGGSGGGK RDQYSEGEAE RASSRASDED DVNGNNRKKL 180 RLSKEQSAFL EESFKEHNTL NPKQKLALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE 240 YLKRCCETLT EENRRLHKEL QELRALKTSN PFYMQLPATT LTMCPSCERV ATTTTTAAAA 300 AAAGATTSTT TTTTTTINPS GNNNESSSKS VSPVFPLNRP KFYPFPQAQN HSHQSS

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MELGLSLGDP PKPPFGFIEK HQTNDDKPSA FCMDLSIGPL RTRTGDDING RRDQPDELTH  60
REQQRPDEIP RKSGSSSSEP PVQLDLLPHA PGGGLLELNR VPKVVVPTGE EEAADETAAL  120
SSSPNSNSGG TSSFQMDIGL YSYGGSGGGK RDQYSEGEAE RASSRASDED DVNGNNRKKL  180
RLSKEQSAFL EESFKEHNTL NPKQKLALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE  240
YLKRCCETLT EENRRLHKEL QELRALKTSN PFYMQLPATT LTMCPSCERV ATTTTTAAAA  300
AAAGATTSTT TTTTTTINPS GNNNESSSKS VSPVFPLNRP KFYPFPQAQN HSHQSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	234	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-70	HD-ZIP family protein