PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON82211.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 861aa MW: 95786.7 Da PI: 8.2855

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON82211.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	1e-06	183	202	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC++f++ G C++G+ C+F H PON82211.1 183 LCKDFSA-GRCRRGNHCPFLH 202 9****.*********** PP
2	zf-CCCH	22	2.8e-07	241	262	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC++f + G C++G++CkF Hg PON82211.1 241 ALCNDFVK-GRCRRGASCKFEHG 262 79****.*********998 PP
3	zf-CCCH	17.4	8.1e-06	305	325	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ffa+ G C+ G C+F+H PON82211.1 305 PCKFFAA-GNCRNGKYCRFSHH 325 79999.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence
MSGSGRKRSS KWDLRDQPQF EDVNVQDDGW PGKTGRSVYH RESGHGWESP ELAGSNGSKW 60 SALETNDQRS KHDSTFLPRE TFSGSRGSHK NENIDKDRNR YVTDSMAWDA DEDYGTRMSP 120 GLDEWRQKNH SQSPKSGWSR SMRDRSRSRS KSRGRSRSPV HGLRRESGFL ERSRSRSGVS 180 SQLCKDFSAG RCRRGNHCPF LHEGDEAYED YWDSRQRKVG ISKYSTLDTR DYPSRSGRSS 240 ALCNDFVKGR CRRGASCKFE HGASDGFSLG SANEVSREKE TDRRRRDTST DRGVEHEARR 300 NIDIPCKFFA AGNCRNGKYC RFSHHTQTYA SPDRKLQDKW ALGRKSDDVD QVWDGPKWND 360 KINASDASKF SEDINGNIGA PETDNAEASM GLSESRRTEK WLDDMDMSPD WNYTVPSASH 420 VVKEEHTRIT QHSESFKDMS LTTCKQSVTQ EAASARINGV HAVVQPMIPE NSLFQPKRDL 480 RDDSAIALPY DDNNAVRKNV SSCTDLNNIF DQNSQRVSVY PFPGLNTIGQ SQVVIPTELQ 540 GGILKNLQNN TLLTEGISVT KPDFQDAKTS LINSGIDPSQ RMVNGEQATH LTNLSASLVQ 600 LFGNGQQLPQ LYAALNSNNS AGTPSFTGGP VTSSTILPVA ATGPQKHNDP RQNSMESKIP 660 EISNNPPSIL TSNTVKADSD TKPEIQLKNL TPLSFPGMSD VTDCQQPGGS VEEPNQQRES 720 LIQLEPNPIS KVTEEKIELN SGGSKKAPEE NSKVDESDPL DGVDKEGPND GKKNKDAKGV 780 RAFKFALVEF VKELLKPTWK DGQIGKDAYK TIVKKVVDKV TGTMQAASIP QTQEKIDHYL 840 SFSKAKLTKL VQAYVEKAQK G

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence

MSGSGRKRSS KWDLRDQPQF EDVNVQDDGW PGKTGRSVYH RESGHGWESP ELAGSNGSKW  60
SALETNDQRS KHDSTFLPRE TFSGSRGSHK NENIDKDRNR YVTDSMAWDA DEDYGTRMSP  120
GLDEWRQKNH SQSPKSGWSR SMRDRSRSRS KSRGRSRSPV HGLRRESGFL ERSRSRSGVS  180
SQLCKDFSAG RCRRGNHCPF LHEGDEAYED YWDSRQRKVG ISKYSTLDTR DYPSRSGRSS  240
ALCNDFVKGR CRRGASCKFE HGASDGFSLG SANEVSREKE TDRRRRDTST DRGVEHEARR  300
NIDIPCKFFA AGNCRNGKYC RFSHHTQTYA SPDRKLQDKW ALGRKSDDVD QVWDGPKWND  360
KINASDASKF SEDINGNIGA PETDNAEASM GLSESRRTEK WLDDMDMSPD WNYTVPSASH  420
VVKEEHTRIT QHSESFKDMS LTTCKQSVTQ EAASARINGV HAVVQPMIPE NSLFQPKRDL  480
RDDSAIALPY DDNNAVRKNV SSCTDLNNIF DQNSQRVSVY PFPGLNTIGQ SQVVIPTELQ  540
GGILKNLQNN TLLTEGISVT KPDFQDAKTS LINSGIDPSQ RMVNGEQATH LTNLSASLVQ  600
LFGNGQQLPQ LYAALNSNNS AGTPSFTGGP VTSSTILPVA ATGPQKHNDP RQNSMESKIP  660
EISNNPPSIL TSNTVKADSD TKPEIQLKNL TPLSFPGMSD VTDCQQPGGS VEEPNQQRES  720
LIQLEPNPIS KVTEEKIELN SGGSKKAPEE NSKVDESDPL DGVDKEGPND GKKNKDAKGV  780
RAFKFALVEF VKELLKPTWK DGQIGKDAYK TIVKKVVDKV TGTMQAASIP QTQEKIDHYL  840
SFSKAKLTKL VQAYVEKAQK G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	277	286	REKETDRRRR
2	282	287	DRRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-12	C3H family protein