PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON82090.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 446aa    MW: 49230.3 Da    PI: 7.4048
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON82090.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS319.37.9e-98554441373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshlta 98 
                 l++lLl+cA++ +sg+l+ a+++L+++s+las dgd+mqRl a f+ ALa rl++ +++l kal+ ++ ++ +    +la+ +    ++P+l f++ + 
  PON82090.1  55 LIQLLLNCAKHAASGNLRHADSCLSQISQLASVDGDSMQRLSARFASALAVRLVKRWPGLHKALNRTQRPKLElGPAQLASSSSSPAAFPCLGFAYAII 153
                 689*************************************************************8888887666778888888899************* PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  ++++ ++++e ++H +Df+      W++++++Las p  +gpp  l  T v+     +k  l ++g  L+k Ae+lg++f++n+l + +l +l++e +
  PON82090.1 154 ARTLVHSMSHEGAIHFVDFGSCDSRLWVPIIRSLASEPrgHGPPlGLSFTCVHG----DKAVLDKLGLCLTKEAESLGLSFQYNPL-HVSLGELTTEVI 247
                 ***********************************98877667769********....***************************6.778********* PP

        GRAS 195 rvkpgEalaVnlvlqlhrll..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                 +++pgEala+ ++l+lh ll              ++  +  ++ +++L +vks+sPkvv +veqeadhn +++++rfl +l+yysa+fdsl+a++++ s
  PON82090.1 248 KTRPGEALAIVSILSLHVLLaeddrvdaqfgahkNKGIKECKQMSQFLAMVKSMSPKVVLLVEQEADHNLNRLVDRFLGSLHYYSAVFDSLDANFGASS 346
                 *******************************976444555557889************************************************88776 PP

        GRAS 280 .....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      +er   E++  grei+n+vaceg er+erhe++ekW  r+++aGF+p+++  + +++ak +l+ ++s+gy+v ++++s+vl+W++rpL++vSaW
  PON82090.1 347 sssdhQERLAFEEM-YGREIENIVACEGLEREERHERYEKWMTRFGRAGFRPIRMWFDPMEDAKKMLEVCGSEGYKVVNNKASFVLCWHERPLYAVSAW 444
                 67777999999999.9*********************************************************************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    
MSSLPPLSTK PDVTLSLNLS PSSTTSFSSP NDHDQLQTTS SSSSLTMPKE RGIVLIQLLL  60
NCAKHAASGN LRHADSCLSQ ISQLASVDGD SMQRLSARFA SALAVRLVKR WPGLHKALNR  120
TQRPKLELGP AQLASSSSSP AAFPCLGFAY AIIARTLVHS MSHEGAIHFV DFGSCDSRLW  180
VPIIRSLASE PRGHGPPLGL SFTCVHGDKA VLDKLGLCLT KEAESLGLSF QYNPLHVSLG  240
ELTTEVIKTR PGEALAIVSI LSLHVLLAED DRVDAQFGAH KNKGIKECKQ MSQFLAMVKS  300
MSPKVVLLVE QEADHNLNRL VDRFLGSLHY YSAVFDSLDA NFGASSSSSD HQERLAFEEM  360
YGREIENIVA CEGLEREERH ERYEKWMTRF GRAGFRPIRM WFDPMEDAKK MLEVCGSEGY  420
KVVNNKASFV LCWHERPLYA VSAWIC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-95GRAS family protein