PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON81682.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 557aa MW: 60777.4 Da PI: 8.3762

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON81682.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	102	124	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PON81682.1 102 FVCEICNKGFQRDQNLQLHRRGH 124 89*******************88 PP
2	zf-C2H2	11.9	0.00067	179	201	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ PON81682.1 179 WKCDKCSKKYAVQSDWKAHSKTC 201 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MSIITGSGGD GGSLSSGNFG REEVVGGGGG VEKQELFENF HNGSNSLSST TTSNGSTTQP 60 LVVLDQQQPP LVKKKRNPPG NPDPTAEVIA LSPNTLLAKN RFVCEICNKG FQRDQNLQLH 120 RRGHNLPWKL RQRSPNEVIR KRVYICPDPS CVHHNPTRAL GDLTGIKKHF CRKHGEKKWK 180 CDKCSKKYAV QSDWKAHSKT CGTREYKCEC GTIFSRRDSF ITHRAFCDAI AEENNKTASL 240 QRQISSNQIS SQQPELISSI LSSINDENDN TPTETTSDQF KHISEHMMIK NNPLTLDHHS 300 MNNNNVAAGG LFSSRSNGLN NMIINSTSTT NISSSAPLSF DQQNGHHLGG GGGGFYLSAT 360 ALLQKAAQMG TTTASSASSA MAPSSYATLD QFVKKDHVQE YQMSSSTTPT STPPPLLPPH 420 FFDVNGNSNS DNGNNKNVGI FSSLLFDHHH QNHAAGSATT FLKDMEQSMN NDDNTSNVVL 480 HGGNSSSVTG GDVLTLDFLG IGRSASRQGN FHHEQKKQVI VNNNLRFGGI NGHPNMQSTL 540 TQFQQYAGLM EKHVWEV

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MSIITGSGGD GGSLSSGNFG REEVVGGGGG VEKQELFENF HNGSNSLSST TTSNGSTTQP  60
LVVLDQQQPP LVKKKRNPPG NPDPTAEVIA LSPNTLLAKN RFVCEICNKG FQRDQNLQLH  120
RRGHNLPWKL RQRSPNEVIR KRVYICPDPS CVHHNPTRAL GDLTGIKKHF CRKHGEKKWK  180
CDKCSKKYAV QSDWKAHSKT CGTREYKCEC GTIFSRRDSF ITHRAFCDAI AEENNKTASL  240
QRQISSNQIS SQQPELISSI LSSINDENDN TPTETTSDQF KHISEHMMIK NNPLTLDHHS  300
MNNNNVAAGG LFSSRSNGLN NMIINSTSTT NISSSAPLSF DQQNGHHLGG GGGGFYLSAT  360
ALLQKAAQMG TTTASSASSA MAPSSYATLD QFVKKDHVQE YQMSSSTTPT STPPPLLPPH  420
FFDVNGNSNS DNGNNKNVGI FSSLLFDHHH QNHAAGSATT FLKDMEQSMN NDDNTSNVVL  480
HGGNSSSVTG GDVLTLDFLG IGRSASRQGN FHHEQKKQVI VNNNLRFGGI NGHPNMQSTL  540
TQFQQYAGLM EKHVWEV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	2e-93	C2H2 family protein