PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON81535.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family NF-YB
Protein Properties Length: 230aa    MW: 26059.8 Da    PI: 7.05
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON81535.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.46.6e-5651146297
       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                 +eqdrflPianv+rimkk++P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfe+yv plkvyl+kyre+egek
  PON81535.1  51 KEQDRFLPIANVGRIMKKMIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFENYVGPLKVYLEKYREIEGEK 146
                 89*******************************************************************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MEDDHHHRYQ SFSDGPNGLG GGSPESPLTS LNTNNSTTSK THNHHHRHNN KEQDRFLPIA  60
NVGRIMKKMI PGNGKISKDA KETVQECVSE FISFVTGEAS DKCQREKRKT INGDDIIWAI  120
TTLGFENYVG PLKVYLEKYR EIEGEKLNIP KQQRTDQQRL QHHQQQQQHF DQQEQISSHV  180
PHFNGLYSPT NLIPQTTSPF VVSDHQGAFP GLPAFSPSSI QKLQPQDVDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.13e-67NF-YB family protein