PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON81348.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 403aa MW: 45394.3 Da PI: 7.0084

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON81348.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.5	1.1e-08	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G+C yG+rC++ H+ PON81348.1 34 ICTFYQK-GFCAYGSRCRYQHV 54 7****.***********7 PP
2	zf-CCCH	18.4	3.8e-06	143	164	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C++G++C+ Hg PON81348.1 143 PICS-FAAAGDCPRGEKCPHVHG 164 6788.*************98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MSKRVLCKFF AHGACLKGEH CEYSHDWKDP PNNICTFYQK GFCAYGSRCR YQHVKAERAQ 60 SSASSSSTIS QQFVVSDSTS LPHSSSTSSK GIAFIPGAVS ELSALSRPFV LPKPPAWKQE 120 YEQSHFLDGG DVGETSVTPA DLPICSFAAA GDCPRGEKCP HVHGDLCPTC GKHCLHPFRP 180 DEKEEHLRTC NKKHKHLEAL KHSQEIECSV CLERVLSKPT AAERKFGLMS ECDHPFCISC 240 IRNWRSSSPT SGFDVNSALR ACPICRKLSY FVVPSVIWYT SKEEKQEIVN SYKAKLKSID 300 CKHFDFGNGN CPFGTSCFYR HTVKPGSYVW KHHRPPPRRP TPRRSNVVEM DALLDMFEHL 360 DEMECYSPED LDSEDTNPWE MGLLFSLMGF DTSDSSSDEE FIF

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MSKRVLCKFF AHGACLKGEH CEYSHDWKDP PNNICTFYQK GFCAYGSRCR YQHVKAERAQ  60
SSASSSSTIS QQFVVSDSTS LPHSSSTSSK GIAFIPGAVS ELSALSRPFV LPKPPAWKQE  120
YEQSHFLDGG DVGETSVTPA DLPICSFAAA GDCPRGEKCP HVHGDLCPTC GKHCLHPFRP  180
DEKEEHLRTC NKKHKHLEAL KHSQEIECSV CLERVLSKPT AAERKFGLMS ECDHPFCISC  240
IRNWRSSSPT SGFDVNSALR ACPICRKLSY FVVPSVIWYT SKEEKQEIVN SYKAKLKSID  300
CKHFDFGNGN CPFGTSCFYR HTVKPGSYVW KHHRPPPRRP TPRRSNVVEM DALLDMFEHL  360
DEMECYSPED LDSEDTNPWE MGLLFSLMGF DTSDSSSDEE FIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-138	C3H family protein