PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON81348.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C3H
Protein Properties Length: 403aa    MW: 45394.3 Da    PI: 7.0084
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON81348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-083454526
                --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                +C f+++ G+C yG+rC++ H+
  PON81348.1 34 ICTFYQK-GFCAYGSRCRYQHV 54
                7******.*************7 PP

2zf-CCCH18.43.8e-06143164426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 ++C+ fa+ G C++G++C+  Hg
  PON81348.1 143 PICS-FAAAGDCPRGEKCPHVHG 164
                 6788.*************98887 PP

Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    
MSKRVLCKFF AHGACLKGEH CEYSHDWKDP PNNICTFYQK GFCAYGSRCR YQHVKAERAQ  60
SSASSSSTIS QQFVVSDSTS LPHSSSTSSK GIAFIPGAVS ELSALSRPFV LPKPPAWKQE  120
YEQSHFLDGG DVGETSVTPA DLPICSFAAA GDCPRGEKCP HVHGDLCPTC GKHCLHPFRP  180
DEKEEHLRTC NKKHKHLEAL KHSQEIECSV CLERVLSKPT AAERKFGLMS ECDHPFCISC  240
IRNWRSSSPT SGFDVNSALR ACPICRKLSY FVVPSVIWYT SKEEKQEIVN SYKAKLKSID  300
CKHFDFGNGN CPFGTSCFYR HTVKPGSYVW KHHRPPPRRP TPRRSNVVEM DALLDMFEHL  360
DEMECYSPED LDSEDTNPWE MGLLFSLMGF DTSDSSSDEE FIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.11e-138C3H family protein