PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON81208.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

HD-ZIP

Protein Properties

Length: 588aa MW: 66343.7 Da PI: 9.4482

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON81208.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.9e-19	40	91	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le+ Fe++ ++ +++ +LA++lgL+ rqV +WFqNrRa++k PON81208.1 40 RRFSDEQIKLLESIFESETKLEPRKKVQLARELGLQPRQVAIWFQNRRARWK 91 68*************************************************9 PP
2	HD-ZIP_I/II	120.6	8.3e-39	38	129	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ++rr+s+eq+klLE+ Fe+e+kLep++Kv+lareLglqprqva+WFqnrRAR+k+kq+E+d+++Lk++yd+l+++ e+L++e+e+L +l++ PON81208.1 38 NQRRFSDEQIKLLESIFESETKLEPRKKVQLARELGLQPRQVAIWFQNRRARWKSKQIEQDFRSLKAEYDSLVSQFESLKEEKESLILQLQK 129 68************************************************************************************999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MERVEFSASE NLQSVTTSLE PQPVAKKKRN KNKNSCNNQR RFSDEQIKLL ESIFESETKL 60 EPRKKVQLAR ELGLQPRQVA IWFQNRRARW KSKQIEQDFR SLKAEYDSLV SQFESLKEEK 120 ESLILQLQKL NDLLLKPHDE KEDKDSGSGL RNANSKNETK PSLQEGLEDR GIMNTSNYIE 180 DSGQQGYEIL NTSQQVDASL TSLESCSQPE SVMAFSSSTI TTSYFNSFSS SSGITLPSSS 240 FNPLKLPLFW PWQKVKVGPL SVSPMGFGTW AWGNQLLWGY QESMDTELQR TFNLAVENGI 300 NLFDTADSYG TGRLNGQSEK LLGKFIREFQ GQKRVQDDIV IATKFAAYPW RLTPGQFVNA 360 CRASLDRIQI EQMGIGQLHW STANYAPLQE MALWNGLVAM YDKGLVRAVG VSNYGPKQLL 420 KIYDYLKARG VPLVSAQVQF SLLSMGGDQL EIKNICDSLG IRVIAYSPLG LGMLTGKYTP 480 DKLPPGPRSF LFRQILPGLE PLLRSLKEIA QKRRKTVPQV AINWCICKGT IPIPGVKTVK 540 QAEDNLGALG WRLSSEELLQ LEYAAIESPK KMVQNIFQTR FVFSYNGR

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MERVEFSASE NLQSVTTSLE PQPVAKKKRN KNKNSCNNQR RFSDEQIKLL ESIFESETKL  60
EPRKKVQLAR ELGLQPRQVA IWFQNRRARW KSKQIEQDFR SLKAEYDSLV SQFESLKEEK  120
ESLILQLQKL NDLLLKPHDE KEDKDSGSGL RNANSKNETK PSLQEGLEDR GIMNTSNYIE  180
DSGQQGYEIL NTSQQVDASL TSLESCSQPE SVMAFSSSTI TTSYFNSFSS SSGITLPSSS  240
FNPLKLPLFW PWQKVKVGPL SVSPMGFGTW AWGNQLLWGY QESMDTELQR TFNLAVENGI  300
NLFDTADSYG TGRLNGQSEK LLGKFIREFQ GQKRVQDDIV IATKFAAYPW RLTPGQFVNA  360
CRASLDRIQI EQMGIGQLHW STANYAPLQE MALWNGLVAM YDKGLVRAVG VSNYGPKQLL  420
KIYDYLKARG VPLVSAQVQF SLLSMGGDQL EIKNICDSLG IRVIAYSPLG LGMLTGKYTP  480
DKLPPGPRSF LFRQILPGLE PLLRSLKEIA QKRRKTVPQV AINWCICKGT IPIPGVKTVK  540
QAEDNLGALG WRLSSEELLQ LEYAAIESPK KMVQNIFQTR FVFSYNGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	94	RRARWKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	2e-31	HD-ZIP family protein