PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON81018.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 298aa MW: 31342.6 Da PI: 9.5356

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON81018.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.7e-06	36	59	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H PON81018.1 36 KSKPCTKFFSTAGCPFGESCHFLH 59 7789******************** PP
2	zf-CCCH	25.5	2.2e-08	101	126	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C++f Ck+Gd+C+FaHg+ PON81018.1 101 KTRVCNRFNSAEGCKFGDKCHFAHGE 126 89**********************96 PP
3	zf-CCCH	40.8	3.8e-13	265	289	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++fa+ GtC +GdrC+FaHg PON81018.1 265 YKTKLCDNFAK-GTCTFGDRCHFAHG 289 9********.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MEFRKRGRHE AGFNANGGFK KSKQELDSLS TGVGSKSKPC TKFFSTAGCP FGESCHFLHY 60 VPGGYNTVAQ MMNLAPAVPP PSRNIAPPAP ALNGSSAPSV KTRVCNRFNS AEGCKFGDKC 120 HFAHGEWEIG KPIAPSHDDP RAMAPIPNRY GGRMEPPPPP PGPASSFGAS ATAKISVDAS 180 LAGAIIGKGG VNSKQICRQT GAKLSIREHE LDPNLRNIEL EGTFEQIKEA SAMVRELIVN 240 VSMSGPGKPT GGSGGPGHAP PGSNYKTKLC DNFAKGTCTF GDRCHFAHGA AELRKTGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	3e-55	C3H family protein