PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON77383.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB_related

Protein Properties

Length: 1037aa MW: 114209 Da PI: 4.521

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON77383.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28	5.2e-09	888	929	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW+++E el++ a +q G + ++ I + ++ +Rt++q+k+++ k PON77383.1 888 RWSKQETELFYGALRQIGAD-FTIIQQLFP-NRTREQVKLKFKK 929 9*****************.*****.********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1037 aa Download sequence
MDPFDDIFAP TATHAGAGGK YQPRVKQQPR KAPASVHPVV PSETKEKADK LSSPGLDTGK 60 LILPVDLQDD RLNIQTGSCL AELNGVEESL KTHEDLSLVV PEDTKTSEKH VSEVVGLEED 120 LTSADVFHQE GGIKITSGVQ KDDDKHLGSR KPESEADFGG LGVDSFVHST TEPTSSNADG 180 SSEHKNFVPA PSTLPDAIKE RLVALPTTGL EVEATFQLGN VGKSAAQVDS MQFDVDPLDD 240 MLSETSNTPA GHKFRPKMKP QPRKGATRAV ASALPNLMEG PVTLCPVVQD SLQSVQSIDI 300 GNNTLTDFVE SSLAMSEIVG IKEPPKDDDY PCSNVALSNN TRNLETGNPS ESHSIDALRS 360 EDAVPDGNED LQSSFGKSLG ENADIYSELE CLDDFITQTT SARATEASQL QSKVHMDVQE 420 GDKFLTSYDV NNDRGGSVSN SRIETQSVEN VSAPEHHSFD GAPSQSCSDY HSTQDPVTSC 480 ETAVSDKHEE VHINDGRSET EVDEALFDFE TCEATVASGQ RAGKYRPKPK LGICKEKPSP 540 NGPQAEVRSA GEPSPNGPQA EVRSSLPAPA VDIVPLDNGI EHGGSISEFP REDVLNYSSA 600 RFGDSVSLAS TSEIRGDAEP TNLAEATLSD CTVLVDMHSE DDPGMVADVG GKSRTGETSS 660 EPHCLRRSKR SSTAIQEIEG GKSSRVLRKR LRQLVDGPVD GVHDINGSFC DPPSTSNRDE 720 EEDSDEEYRV DNTSRKKKAT RKVNELAPGN EKPVRKRKSA KEASDELTNK PPRKFSHSTR 780 RRKRTVDKAL LDMPEDEIDR QRLPIKDLIL LAEHRERMAI KDASKLKTPQ TNQSVENSFH 840 EDTSYNEETF VSEQDQHYDD DDQATYRAQP STRFINYQSF MDKTPSTRWS KQETELFYGA 900 LRQIGADFTI IQQLFPNRTR EQVKLKFKKE ERQHPLRITE ALNNRSKDHS HFESVIDRLQ 960 ELAAEAKQES IGNESYCVTG EEQVEEATHN ANDEQTKSEL DDEVVKDQEA EVAEVQKSPL 1020 KSDEIDDDLD RWNFYDY

Sequence ? help Back to Top

Protein Sequence Length: 1037 aa Download sequence

MDPFDDIFAP TATHAGAGGK YQPRVKQQPR KAPASVHPVV PSETKEKADK LSSPGLDTGK  60
LILPVDLQDD RLNIQTGSCL AELNGVEESL KTHEDLSLVV PEDTKTSEKH VSEVVGLEED  120
LTSADVFHQE GGIKITSGVQ KDDDKHLGSR KPESEADFGG LGVDSFVHST TEPTSSNADG  180
SSEHKNFVPA PSTLPDAIKE RLVALPTTGL EVEATFQLGN VGKSAAQVDS MQFDVDPLDD  240
MLSETSNTPA GHKFRPKMKP QPRKGATRAV ASALPNLMEG PVTLCPVVQD SLQSVQSIDI  300
GNNTLTDFVE SSLAMSEIVG IKEPPKDDDY PCSNVALSNN TRNLETGNPS ESHSIDALRS  360
EDAVPDGNED LQSSFGKSLG ENADIYSELE CLDDFITQTT SARATEASQL QSKVHMDVQE  420
GDKFLTSYDV NNDRGGSVSN SRIETQSVEN VSAPEHHSFD GAPSQSCSDY HSTQDPVTSC  480
ETAVSDKHEE VHINDGRSET EVDEALFDFE TCEATVASGQ RAGKYRPKPK LGICKEKPSP  540
NGPQAEVRSA GEPSPNGPQA EVRSSLPAPA VDIVPLDNGI EHGGSISEFP REDVLNYSSA  600
RFGDSVSLAS TSEIRGDAEP TNLAEATLSD CTVLVDMHSE DDPGMVADVG GKSRTGETSS  660
EPHCLRRSKR SSTAIQEIEG GKSSRVLRKR LRQLVDGPVD GVHDINGSFC DPPSTSNRDE  720
EEDSDEEYRV DNTSRKKKAT RKVNELAPGN EKPVRKRKSA KEASDELTNK PPRKFSHSTR  780
RRKRTVDKAL LDMPEDEIDR QRLPIKDLIL LAEHRERMAI KDASKLKTPQ TNQSVENSFH  840
EDTSYNEETF VSEQDQHYDD DDQATYRAQP STRFINYQSF MDKTPSTRWS KQETELFYGA  900
LRQIGADFTI IQQLFPNRTR EQVKLKFKKE ERQHPLRITE ALNNRSKDHS HFESVIDRLQ  960
ELAAEAKQES IGNESYCVTG EEQVEEATHN ANDEQTKSEL DDEVVKDQEA EVAEVQKSPL  1020
KSDEIDDDLD RWNFYDY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	687	693	LRKRLRQ
2	735	758	RKKKATRKVNELAPGNEKPVRKRK
3	736	759	RKKKATRKVNELAPGNEKPVRKRK
4	752	758	KPVRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	5e-43	MYB_related family protein