PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON74843.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C3H
Protein Properties Length: 415aa    MW: 45720.4 Da    PI: 7.61
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON74843.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45e-08140160526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C++++r G C +Gd+C FaHg
  PON74843.1 140 VCPDYRR-GGCGRGDSCEFAHG 160
                 7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    
MSSSSVCSDQ QHKLHHHHHH LLLRDLDIPP RKLLTRRNHH HHQDLTTADM FSSGSPRFSP  60
GGADDSTLFQ KFLPYNNADG ESDDDGESDP YSSDHFRMYE FKVRRCTRSR SHDWTDCPFA  120
HPGEKARRRD PRRHHYSGTV CPDYRRGGCG RGDSCEFAHG VFECWLHPAR YRTEACKDGK  180
NCKRKVCFFA HTPRQLRILP LHSSGSSPEM ASPVSSKKKI KYPSLNSPSS TNHCCVFCSC  240
HNSVTSSPTS TLLGISHFSP PMSPEKFSPI SGYGKERYGG AGGGHFSGPG VVSYKDALTD  300
LMSSLEAMNF GEAASPVSPI SVAGGDRNLP WVDVFPFKGG GADDQQQFIL SPSTPNNPSG  360
SENFFGGAGS SKRYNNIVNS NNNNNDDGNE NKLNDVNNSG PSSDPDLGWV NDLLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-82C3H family protein