PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON72430.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C2H2
Protein Properties Length: 221aa    MW: 23830.3 Da    PI: 8.816
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON72430.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000264567123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                +kC+ C ++F ++  L  H++ H
  PON72430.1 45 FKCQFCRRVFANSQALGGHQNAH 67
                89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MSDHNPSTTS STLKLFGFPI TENGEVLQVE KPDHQTSIWE ENRKFKCQFC RRVFANSQAL  60
GGHQNAHKRE RQRVSAQFQG QGPHLVGDVS SGPVLSPHSI RSSSSSSSSS SPSAASVYTA  120
GRFTSIDNTS CSSTTTTTTC CAVRFDRSQA VTLNYPPSQA AFVAPSYSSY RVPNYNSHYC  180
LMSLRPAEQL VGANTTVLSS SNTTSKAEVG VDLHLKLSLS G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.11e-11C2H2 family protein