PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON72173.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

Trihelix

Protein Properties

Length: 879aa MW: 97312.8 Da PI: 8.8166

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON72173.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.3	8.6e-23	787	867	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++qev++Li++r e+++r++ k++++lWee+s+ + + g++rsp qCk++w +l ++y+++k g+k++ +++pyf++++ PON72173.1 787 KWSNQEVKKLIKMRGELHSRFQVVKRRMALWEEISRELLADGINRSPGQCKSRWTSLVQEYEETKSGKKSN-----KSWPYFEEMN 867 7******************************************************************84.....56*****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 879 aa Download sequence
MVALGSLSLC PCSLLWRSKL PKRSISCSLG SPNATGTPKS RAPRKRPGRK EGPRKSMEDS 60 VQRKMEQFYE GREGPPIRVL PIGGLGEIGM NCMLVGNYDR YILIDAGVMF PDYDELGVQK 120 IIPDTTFIKR WSHKIEAVVI THGHEDHIGA LPWVIPALDS NTPIFASSFT MELIKKRLKE 180 NGIFVSSRLK VFRTKRKFMA GPFEIEPLRV THSIPDCCGL VLRCADGTIL HTGDWKIDES 240 PLDGKVFDRE TLEELSKEGV TLMMSDSTNV LSPGRTVSES VVADALLRHI SAAKGRVITT 300 QFASNIHRLG SVKAAADITG RKLVFVGMSL RTYLDAAFKD GKAPIDPSSL VKVEDIDAYA 360 PKDLLVVTTG SQAEPRAALN LASYGSSHSL KLNKEDLILY SAKVIPGNES RVMDMLNRIS 420 EIGSTIVMGK NEGLHTSGHA YRGELEEVLK IVKPQHFLPI HGELLFLKEH ELLGRSTGVR 480 HTTVIRNGEM LGVSHLRNRR VLSNGFTLLG KENLQLKYSD GDKAFGTSSE LCVDERLKIA 540 LDGIIVVSME ILRPQNVNGL FENTLKGKIK ITTRCLWLDK GKLLDALHKA AHAALSSCPV 600 NCPLSHMERT VSEVLRKLVR KYSGKRPEVI AIAVENPAAV ILDEVGARLS GKSHVGFEIS 660 ALKKKIDGRP NKSKSNRGQA EVEKRNSPLD VNLQEDLGGD DVELEGLLPE EETTASSSDS 720 DIISSDSPES DEFWRSFTGS ALPVDGVVKE NNGSITSEEQ ILELEKDGKE SIETTDSKPK 780 KPVKRNKWSN QEVKKLIKMR GELHSRFQVV KRRMALWEEI SRELLADGIN RSPGQCKSRW 840 TSLVQEYEET KSGKKSNKSW PYFEEMNRVL SDSEAMAAK

Sequence ? help Back to Top

Protein Sequence Length: 879 aa Download sequence

MVALGSLSLC PCSLLWRSKL PKRSISCSLG SPNATGTPKS RAPRKRPGRK EGPRKSMEDS  60
VQRKMEQFYE GREGPPIRVL PIGGLGEIGM NCMLVGNYDR YILIDAGVMF PDYDELGVQK  120
IIPDTTFIKR WSHKIEAVVI THGHEDHIGA LPWVIPALDS NTPIFASSFT MELIKKRLKE  180
NGIFVSSRLK VFRTKRKFMA GPFEIEPLRV THSIPDCCGL VLRCADGTIL HTGDWKIDES  240
PLDGKVFDRE TLEELSKEGV TLMMSDSTNV LSPGRTVSES VVADALLRHI SAAKGRVITT  300
QFASNIHRLG SVKAAADITG RKLVFVGMSL RTYLDAAFKD GKAPIDPSSL VKVEDIDAYA  360
PKDLLVVTTG SQAEPRAALN LASYGSSHSL KLNKEDLILY SAKVIPGNES RVMDMLNRIS  420
EIGSTIVMGK NEGLHTSGHA YRGELEEVLK IVKPQHFLPI HGELLFLKEH ELLGRSTGVR  480
HTTVIRNGEM LGVSHLRNRR VLSNGFTLLG KENLQLKYSD GDKAFGTSSE LCVDERLKIA  540
LDGIIVVSME ILRPQNVNGL FENTLKGKIK ITTRCLWLDK GKLLDALHKA AHAALSSCPV  600
NCPLSHMERT VSEVLRKLVR KYSGKRPEVI AIAVENPAAV ILDEVGARLS GKSHVGFEIS  660
ALKKKIDGRP NKSKSNRGQA EVEKRNSPLD VNLQEDLGGD DVELEGLLPE EETTASSSDS  720
DIISSDSPES DEFWRSFTGS ALPVDGVVKE NNGSITSEEQ ILELEKDGKE SIETTDSKPK  780
KPVKRNKWSN QEVKKLIKMR GELHSRFQVV KRRMALWEEI SRELLADGIN RSPGQCKSRW  840
TSLVQEYEET KSGKKSNKSW PYFEEMNRVL SDSEAMAAK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	778	795	KPKKPVKRNKWSNQEVKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein