PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON69670.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 1407aa MW: 153944 Da PI: 8.0219

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON69670.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.5	8.2e-07	555	578	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +f+r G C++G++C+++H++ PON69670.1 555 VPECFDFLR-GRCNRGASCRYMHPE 578 578999*.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1407 aa Download sequence
MGNSHVSSVA PPPPPSSPPP IPPSPPKSAS SPFSISRPRV HGSGDNVRAT NQVGDNASMH 60 DNSQNLEGGN FCEVGPLPRN VPLIAGNEML NLSPPPSKPT EAKTIQRIED LCQLIAKNGP 120 GVEDVTRQKE YGNPEYEFLL GGEPGSEAAI GHEYFLWLKN KCLLTTKSHE EQREPALMPL 180 QVGSLTQPEP LMASAGFTLS DDSDMEMEDD ITISDKDREM NRSTGALLTS EGLTSKSASK 240 VHSQVMYSVG GAECLLDSHL EKSVSPLADN LSASCASVAV EANNSKKCSE LIKGGSPIRL 300 LQDYASDGSS EDDDQLLHEG INPSTVLPSF ITGASSHNKD TGSCIGRDPG SKSQHRLRKD 360 EKGSGQLSDS CLSHKAADYS RDSQGEIKDA GIAFIATARA DECLDNNPGN KSFAIDATSH 420 VDFQRKVTSD CADGHVISKR GKTKENEEKK EKSESASLKV DEFGRLVREG SIDSESDSGY 480 TDRHERRGKR GRSRSRSRSP LDRRRMRRSL RRRKEKRSRS RSWSPRNRRS RSRSPSYRRA 540 DEFGGEKLRS DRGRVPECFD FLRGRCNRGA SCRYMHPEVD KSNSSRRYRS RQKYREVPSS 600 TKNYKTNKET KKSHEEHVSD EAQIQEMKGG KVDWRRKDIV MDSQQSVTLD RGSWLIDSSM 660 VKYHSPGTVQ EKEIIREKSA EPNPQIPDNK TSLEESDQKQ SVDVFPSHCV GNTNTLKTRG 720 DSTPDMLPLV KSTVIHQPQS NTSVAEVQNT DFPCHQMDDS SVSDASPDQT SLASPKKFSK 780 SELFPNNVLP TQSLPNASSC QEHSSEPAAL PYPAPKVLSS PTYSGPTIPH QYSQLLPPPP 840 PPPPPPPPPP PPPPPPPPPP PPPPPPPLPA AAQSTNAPHM RQLPVDYSLM PQVASYALQS 900 AHARNPHAYH QASLANQHPQ LSVPPSSSWT SLPPPPPRPS YDLCFNTETA TPGVSSQFQH 960 SPFPPRNDLC SQISVRPYPS ELHSNSQFSE FLHQAYPLMQ ELQRPKLENS GSGKLISPFV 1020 AASLLGEDHI THQDFNTSLG HGSLHQTPFP SQELAVNKML PISSDLPSGE LVKSTSQIRP 1080 FSHRQQVASH LQYSLGDSSG GMPGKAGSTS QYPSDLLDRN RSSDPDFGVS RISAHYNPYA 1140 STFEQPLSSK FSSSAFGHDK GVVCGNQYDT PFSLSHAAVD GQGVGSFGSR QTTSAPSSAR 1200 AVGQILPRAS GDQYDPLFDS IEPSSNAKRK VHQRRKWEPA TDSDAKEKHS GSQKPLDLEE 1260 NNRHEVAAVA STTSMDNDEF GETADAEVGA VENESPSNLV GLATTGEIET DRKSSGKKKK 1320 KDSKSSKHFK IAIADFVKDV LKPSWRQGNM SKEAFKTIVK KTVDKVSGAM RGHQIPKSQA 1380 KIDHYIDSSQ RKLTRLVMGY VDKYVKV

Sequence ? help Back to Top

Protein Sequence Length: 1407 aa Download sequence

MGNSHVSSVA PPPPPSSPPP IPPSPPKSAS SPFSISRPRV HGSGDNVRAT NQVGDNASMH  60
DNSQNLEGGN FCEVGPLPRN VPLIAGNEML NLSPPPSKPT EAKTIQRIED LCQLIAKNGP  120
GVEDVTRQKE YGNPEYEFLL GGEPGSEAAI GHEYFLWLKN KCLLTTKSHE EQREPALMPL  180
QVGSLTQPEP LMASAGFTLS DDSDMEMEDD ITISDKDREM NRSTGALLTS EGLTSKSASK  240
VHSQVMYSVG GAECLLDSHL EKSVSPLADN LSASCASVAV EANNSKKCSE LIKGGSPIRL  300
LQDYASDGSS EDDDQLLHEG INPSTVLPSF ITGASSHNKD TGSCIGRDPG SKSQHRLRKD  360
EKGSGQLSDS CLSHKAADYS RDSQGEIKDA GIAFIATARA DECLDNNPGN KSFAIDATSH  420
VDFQRKVTSD CADGHVISKR GKTKENEEKK EKSESASLKV DEFGRLVREG SIDSESDSGY  480
TDRHERRGKR GRSRSRSRSP LDRRRMRRSL RRRKEKRSRS RSWSPRNRRS RSRSPSYRRA  540
DEFGGEKLRS DRGRVPECFD FLRGRCNRGA SCRYMHPEVD KSNSSRRYRS RQKYREVPSS  600
TKNYKTNKET KKSHEEHVSD EAQIQEMKGG KVDWRRKDIV MDSQQSVTLD RGSWLIDSSM  660
VKYHSPGTVQ EKEIIREKSA EPNPQIPDNK TSLEESDQKQ SVDVFPSHCV GNTNTLKTRG  720
DSTPDMLPLV KSTVIHQPQS NTSVAEVQNT DFPCHQMDDS SVSDASPDQT SLASPKKFSK  780
SELFPNNVLP TQSLPNASSC QEHSSEPAAL PYPAPKVLSS PTYSGPTIPH QYSQLLPPPP  840
PPPPPPPPPP PPPPPPPPPP PPPPPPPLPA AAQSTNAPHM RQLPVDYSLM PQVASYALQS  900
AHARNPHAYH QASLANQHPQ LSVPPSSSWT SLPPPPPRPS YDLCFNTETA TPGVSSQFQH  960
SPFPPRNDLC SQISVRPYPS ELHSNSQFSE FLHQAYPLMQ ELQRPKLENS GSGKLISPFV  1020
AASLLGEDHI THQDFNTSLG HGSLHQTPFP SQELAVNKML PISSDLPSGE LVKSTSQIRP  1080
FSHRQQVASH LQYSLGDSSG GMPGKAGSTS QYPSDLLDRN RSSDPDFGVS RISAHYNPYA  1140
STFEQPLSSK FSSSAFGHDK GVVCGNQYDT PFSLSHAAVD GQGVGSFGSR QTTSAPSSAR  1200
AVGQILPRAS GDQYDPLFDS IEPSSNAKRK VHQRRKWEPA TDSDAKEKHS GSQKPLDLEE  1260
NNRHEVAAVA STTSMDNDEF GETADAEVGA VENESPSNLV GLATTGEIET DRKSSGKKKK  1320
KDSKSSKHFK IAIADFVKDV LKPSWRQGNM SKEAFKTIVK KTVDKVSGAM RGHQIPKSQA  1380
KIDHYIDSSQ RKLTRLVMGY VDKYVKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	490	498	RGRSRSRSR
2	511	516	RRRKEK
3	516	521	KRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-14	C3H family protein