PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON68840.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C2H2
Protein Properties Length: 189aa    MW: 21356 Da    PI: 5.4931
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON68840.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000115577123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ Fs+   L  H++ H
  PON68840.1 55 YECTFCKRGFSNAQALGGHMNIH 77
                99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MDSSSEQPNQ ENPDEAIPMI MSESDQDDHY HHDQHDQQST APVGGSSSSS SARSYECTFC  60
KRGFSNAQAL GGHMNIHRKD KAKLKQLVPR PFSLINHETQ QQQQQRSLEI PRMLSSYSSP  120
NPWFDLDKEG NTTRDDDDQV QGKSSDHAGR NSSSDPSDHH QLDLELRLGR ERPDQDSSTP  180
SNMATRKFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-16C2H2 family protein