PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON67988.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 1620aa MW: 179889 Da PI: 6.813

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON67988.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	1508	1533	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kC C +sF +k +L+ H r+ + PON67988.1 1508 HKCDieGCRMSFDTKAELMLHKRNrC 1533 789999****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1620 aa Download sequence
MGNVEIPKWL EGLPLAPVFR PTDTEFADPI AYISKIEKEA GAFGICKIIP PLPKPSKKYV 60 FSNLNKSLLK CPELGSHGNS LNDRSSSKLG SLDGSNDEEV RAVFTTRQQE LGQNVKKTKG 120 AVPNPPSGVH KQVWQSGEIY TLEQFESKSK TFAKSQLGMI KEVSPLVIEA MFWKASSEKP 180 IYVEYANDVP GSGFGEPEGQ FRYFHRRRRK RNFYRRSRES SSRNKNDVAT NGIDILRTDD 240 VKYASHMNSS DISQSPASVP LLPSNETSQS SKRKSQNSCH DMEGTAGWKL SNSPWNLQVI 300 SRSPGSLTRF MPDDIPGVTS PMVYIGMLFS WFAWHVEDHE LHSMNYLHTG SSKTWYAVPG 360 DYAFAFEEVV RSEAYGGNID RLAALTLLGE KTTLVPPEVV VASGIPCCRL IQNPGEFVVT 420 FPRAYHVGFS HGFNCGEAAN FGTPLWLKVA KEAAVRRAAM NYLPMLSHQQ LLYLLTMSFV 480 SRVPRSLLPG VRSSRLKDRQ KEERELLVKK AFIEDILNEN NILSVLLGKD SNYHAVLWNP 540 DLLTYPSKET LSPSAGATIS TKATENASCV DSGKHDNEQH YLLDDMSLYM ENSNDLYLGS 600 DDLSCDFQVD SGTLACVACG ILGFPFMSVV QPSEKASLEL LRDNHLLVQE CPGVSGYLNS 660 FTAADPGASN NGCITENLPP VSNSLSAMDL PVPSAIKFDH GRNTCNKFLR PRSFCLEHAV 720 EIVDMLQCKG GAEVLVICHS DYQKIKAHAA AIAEDIGSPF NYSEVPLDVA SKKDLNLIDL 780 AIDDDGHDEC DKDWTSKLGI NLRHCVKIRK NSSSKQVQHA LTLGGLLSDK CSSSDSLSLK 840 WQLRRSRTKK IYYPAHIKPC HSAQLKKNGV VGETSLTHKK EKKLLQYSRR KFKTKPGGST 900 EAGKVRGRHD SVRDLDKLSR RVSENNVCSV GNSTSFKFSA LERMSETQNE NHTPEATRDE 960 SLKVSVGSVE TQIENHILEE INMDGKAHHL ATLDGSEMQD ELNVQTQKVS GTNELGEKQH 1020 ACPSSRITET CFKLKGDQDV EGKFNKISEA CNLVSEGHST VEADEGVLTD KNSDLTKMTS 1080 SHVVDPCDDD FEGQIENVAV EKVSTSAEVC DSIHVVNEVA LVVHATRVKD EKPVSYNCMV 1140 LEDHNFASNE ECSRDPREIC STNDPSNGTA LEVKPQEEIK TRMIECRPAS VEETSEAPCK 1200 THTTEDFNNN ICLEDQPQPE IKAVVSEPIP VLLEETSEIL SDLCAAAKLC CGLTSEETLQ 1260 RKFGTSDRSS EELASSSVTE MEVHHYCVSV KEHSNVPRAD SGQDDLGTDV TSENGFHQET 1320 LLTNGEQGSA PILVTQRVDA LTPVNAGEFE LPKSPKGHLG DGLLSDNNKE RKSEKSALPT 1380 VISLQKYSRV KRETRATEDL CNGSEVCSSQ DDRELDNTKS NDVDTGSNPV KGRKRKREID 1440 LLTENKFSCN GFSRSPCEGL RPRTGKDAAS CGNDILREVE GKPATKVKKP SNVRVPPKDK 1500 KENSRKSHKC DIEGCRMSFD TKAELMLHKR NRCPHEGCGK RFSSHKYAMI HHRVHDDQRP 1560 LKCPWKGCSM SFKWAWARTE HIRVHTGERP YKCKIESCGL SFRFVSDFSR HRRKTGHYVN

Sequence ? help Back to Top

Protein Sequence Length: 1620 aa Download sequence

MGNVEIPKWL EGLPLAPVFR PTDTEFADPI AYISKIEKEA GAFGICKIIP PLPKPSKKYV  60
FSNLNKSLLK CPELGSHGNS LNDRSSSKLG SLDGSNDEEV RAVFTTRQQE LGQNVKKTKG  120
AVPNPPSGVH KQVWQSGEIY TLEQFESKSK TFAKSQLGMI KEVSPLVIEA MFWKASSEKP  180
IYVEYANDVP GSGFGEPEGQ FRYFHRRRRK RNFYRRSRES SSRNKNDVAT NGIDILRTDD  240
VKYASHMNSS DISQSPASVP LLPSNETSQS SKRKSQNSCH DMEGTAGWKL SNSPWNLQVI  300
SRSPGSLTRF MPDDIPGVTS PMVYIGMLFS WFAWHVEDHE LHSMNYLHTG SSKTWYAVPG  360
DYAFAFEEVV RSEAYGGNID RLAALTLLGE KTTLVPPEVV VASGIPCCRL IQNPGEFVVT  420
FPRAYHVGFS HGFNCGEAAN FGTPLWLKVA KEAAVRRAAM NYLPMLSHQQ LLYLLTMSFV  480
SRVPRSLLPG VRSSRLKDRQ KEERELLVKK AFIEDILNEN NILSVLLGKD SNYHAVLWNP  540
DLLTYPSKET LSPSAGATIS TKATENASCV DSGKHDNEQH YLLDDMSLYM ENSNDLYLGS  600
DDLSCDFQVD SGTLACVACG ILGFPFMSVV QPSEKASLEL LRDNHLLVQE CPGVSGYLNS  660
FTAADPGASN NGCITENLPP VSNSLSAMDL PVPSAIKFDH GRNTCNKFLR PRSFCLEHAV  720
EIVDMLQCKG GAEVLVICHS DYQKIKAHAA AIAEDIGSPF NYSEVPLDVA SKKDLNLIDL  780
AIDDDGHDEC DKDWTSKLGI NLRHCVKIRK NSSSKQVQHA LTLGGLLSDK CSSSDSLSLK  840
WQLRRSRTKK IYYPAHIKPC HSAQLKKNGV VGETSLTHKK EKKLLQYSRR KFKTKPGGST  900
EAGKVRGRHD SVRDLDKLSR RVSENNVCSV GNSTSFKFSA LERMSETQNE NHTPEATRDE  960
SLKVSVGSVE TQIENHILEE INMDGKAHHL ATLDGSEMQD ELNVQTQKVS GTNELGEKQH  1020
ACPSSRITET CFKLKGDQDV EGKFNKISEA CNLVSEGHST VEADEGVLTD KNSDLTKMTS  1080
SHVVDPCDDD FEGQIENVAV EKVSTSAEVC DSIHVVNEVA LVVHATRVKD EKPVSYNCMV  1140
LEDHNFASNE ECSRDPREIC STNDPSNGTA LEVKPQEEIK TRMIECRPAS VEETSEAPCK  1200
THTTEDFNNN ICLEDQPQPE IKAVVSEPIP VLLEETSEIL SDLCAAAKLC CGLTSEETLQ  1260
RKFGTSDRSS EELASSSVTE MEVHHYCVSV KEHSNVPRAD SGQDDLGTDV TSENGFHQET  1320
LLTNGEQGSA PILVTQRVDA LTPVNAGEFE LPKSPKGHLG DGLLSDNNKE RKSEKSALPT  1380
VISLQKYSRV KRETRATEDL CNGSEVCSSQ DDRELDNTKS NDVDTGSNPV KGRKRKREID  1440
LLTENKFSCN GFSRSPCEGL RPRTGKDAAS CGNDILREVE GKPATKVKKP SNVRVPPKDK  1500
KENSRKSHKC DIEGCRMSFD TKAELMLHKR NRCPHEGCGK RFSSHKYAMI HHRVHDDQRP  1560
LKCPWKGCSM SFKWAWARTE HIRVHTGERP YKCKIESCGL SFRFVSDFSR HRRKTGHYVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein