PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON66451.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family HD-ZIP
Protein Properties Length: 779aa    MW: 85279.1 Da    PI: 6.0834
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON66451.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-2054109156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 ++k +++t++q++eLe++F+++++p++++r eL+++l L+++qVk+WFqNrR+++k
  PON66451.1  54 KKKYHRHTPNQIQELEAFFKECPHPDEKQRLELSRRLALETKQVKFWFQNRRTQMK 109
                 79999************************************************998 PP
2START194.16.6e-612825052206
                 HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
       START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                 la++a++el+k+a+ae p+W +s+    e +n +e+ ++f +  +     + +ea r++ vv+ ++  lve+l+d + +W e+++    +a+t++ is 
  PON66451.1 282 LALAAMDELMKLAQAEGPLWIRSAnggkETLNHEEYARTFLPCIGtkpsgYVSEATRDTSVVIINSLALVETLMDAN-RWAEMFPclvsRASTIDMISA 379
                 6899*************************************9988999*****************************.********************* PP

                 T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
       START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                 g      galq+m aelq+lsplvp R   f+R+++q+ +g+w++vdvS+d +++  +  s+ R+++lpSg+l++++++g+skvtwveh +++++ +h+
  PON66451.1 380 GvggtrnGALQVMHAELQVLSPLVPvRPLKFLRFCKQHADGVWAVVDVSTDINREALNADSYFRCRRLPSGCLVQDMPDGYSKVTWVEHSEYDDSGVHQ 478
                 *******************************************************988***************************************** PP

                 HHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 180 llrslvksglaegaktwvatlqrqcek 206
                 ++rs+++sg+ +ga++w+atlqrqce+
  PON66451.1 479 IFRSFLSSGMGFGAQRWLATLQRQCEC 505
                 *************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    
MDNHGEMGLL GENFDLGMIG RIRDEGYESR SGSDNLEGAS GDDQDAGDDQ PPRKKKYHRH  60
TPNQIQELEA FFKECPHPDE KQRLELSRRL ALETKQVKFW FQNRRTQMKI DVNCFSNGKM  120
VNLNQTQLER HENIILRQEN DKLRAENNMM KDAMSNPMCN QCGGPAIPGQ ISFEEHQLRI  180
ENARLKDELN RICALANKFL GRPLSSLAAP ITLPSLTAGL ELAVGRNGIG GLNAVGPPLP  240
MGLDLGDGVS STAHMIPLVK PSMGMNMMGN EIPFERSMFI DLALAAMDEL MKLAQAEGPL  300
WIRSANGGKE TLNHEEYART FLPCIGTKPS GYVSEATRDT SVVIINSLAL VETLMDANRW  360
AEMFPCLVSR ASTIDMISAG VGGTRNGALQ VMHAELQVLS PLVPVRPLKF LRFCKQHADG  420
VWAVVDVSTD INREALNADS YFRCRRLPSG CLVQDMPDGY SKVTWVEHSE YDDSGVHQIF  480
RSFLSSGMGF GAQRWLATLQ RQCECLATLM SPSVANNDQI AISPGGRRSL LKLAKRMVDN  540
FCAGVCASTV RKWDKLRVDN VGEDVRVMTR KSMDDPGEPP GIILSAATSV WIPVSQKRLF  600
EFLRDERMRS EWDILSHGGP MQEMVHITKG QRHGNHVSLL RASSIGSNDS TMLILQETWT  660
DASGSMVVYA PVDTTAINVV MHGGDSAYVA LLPSGFAILP DGSSQSSYVA ANNEGGPSVK  720
GEANDGNGDG GGCLLTVGFQ ILVNSLPSAK LTVESVETVN NLISCTIDKI KAALNRSSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein