PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON65512.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family LSD
Protein Properties Length: 146aa    MW: 15203.8 Da    PI: 7.7276
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON65512.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.3e-132953125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                C+gCr+lL YP GA+sV+Ca+C++V
  PON65512.1 29 CSGCRNLLLYPVGATSVCCAVCNAV 53
                ************************9 PP

2zf-LSD146.84.9e-156892125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                CggC+tlL+Y rGA+sV+C++C+tV
  PON65512.1 68 CGGCHTLLMYIRGATSVQCSCCHTV 92
                ************************9 PP

3zf-LSD137.63.6e-12106130125
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                 Cg+C  lL+Y +GA+sV+Ca+C++V
  PON65512.1 106 CGNCMMLLMYQYGARSVKCAVCNFV 130
                 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    
MPVPLAPYPT PPAPYTPPSN AGAQSQLVCS GCRNLLLYPV GATSVCCAVC NAVTAVPPPG  60
TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVNCGNCM MLLMYQYGAR  120
SVKCAVCNFV TSVGVPTSTA EQKFNN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.31e-68LSD family protein