PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON65470.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 862aa MW: 102332 Da PI: 6.989

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON65470.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.1e-06	205	224	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H PON65470.1 205 CPFHLKTGACRFGQRCSRVH 224 ******************99 PP
2	zf-CCCH	25.9	1.7e-08	334	361	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ PON65470.1 334 WKVAICGEYMKSRfkTCSRGTACNFIHC 361 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 862 aa Download sequence
MENGMNRKEK RKALKKMKRK QTRKELAVKE REEEEARLND PEEQKRISLM EQVEAERSER 60 GRKEFEEREK AWLEDMELKK KKMMEEEEEN RRKAMEEESR KLQVENENED NESDEWEYEE 120 GPAEIIWQGN EIIFKKKKIR VSKKKKELDE LSGREDANRP TSNPLPPESE AFAEYRNSLI 180 SGQHLMENVA EQVPNFGTEQ DKAHCPFHLK TGACRFGQRC SRVHFYPDKS CTLLIKNMYS 240 GPGLAWEQDE GLEYTDEEVE HCYEEFYEDV HTEFLKYGEI VNFKVCRNGS FHLRGNVYVH 300 FKSLDSAVLA HQFVNGRYFA GKQVRCEFVN VTRWKVAICG EYMKSRFKTC SRGTACNFIH 360 CFRNPCGDYE WADSDKPPPR YWVKKMVALF GYSDESAFEG LREQENFDQL DSSGKGFTAD 420 ANRYCSRRSR SRETSYRRHS CSDRRMDNED YDLRRADQLR CTNNNKEPGK RVDEDMREEH 480 IDLEDKRHRK RKTPLTDSDG ELFDDDREIC DDEFHYYTRE SSRWRSRDDK RKTNEYGSDG 540 DWLTREGEGE RHHSHTRKSS KYHRKARKLD DYEYHKSHKV DGDGRDKCRD RETYHDSRKK 600 SLRHSRKAGY AGYHGDSKHR SHNTDRGWSD KDSHCDELLE KGEVRHRLQF RGQLNEVSDF 660 SNDQREPAKC LEDQGGHLNR DIRKADSCNE NLRLGRSHDS SSSSQYDERY RSHDLHLRYS 720 SDVQMDKQDR WESEVYSDKK PHKSRTATSS SSPGRYNGRG KSCDYDIYHY YDKAHEENPS 780 ESEEVIPKHQ KSQRKSDTNH YEQYSGKIEN ESRSSSSGKL SHGRCLNSSE EKDFHEDDKE 840 LRRHHKKNWS HPSFDDHKKH GE

Sequence ? help Back to Top

Protein Sequence Length: 862 aa Download sequence

MENGMNRKEK RKALKKMKRK QTRKELAVKE REEEEARLND PEEQKRISLM EQVEAERSER  60
GRKEFEEREK AWLEDMELKK KKMMEEEEEN RRKAMEEESR KLQVENENED NESDEWEYEE  120
GPAEIIWQGN EIIFKKKKIR VSKKKKELDE LSGREDANRP TSNPLPPESE AFAEYRNSLI  180
SGQHLMENVA EQVPNFGTEQ DKAHCPFHLK TGACRFGQRC SRVHFYPDKS CTLLIKNMYS  240
GPGLAWEQDE GLEYTDEEVE HCYEEFYEDV HTEFLKYGEI VNFKVCRNGS FHLRGNVYVH  300
FKSLDSAVLA HQFVNGRYFA GKQVRCEFVN VTRWKVAICG EYMKSRFKTC SRGTACNFIH  360
CFRNPCGDYE WADSDKPPPR YWVKKMVALF GYSDESAFEG LREQENFDQL DSSGKGFTAD  420
ANRYCSRRSR SRETSYRRHS CSDRRMDNED YDLRRADQLR CTNNNKEPGK RVDEDMREEH  480
IDLEDKRHRK RKTPLTDSDG ELFDDDREIC DDEFHYYTRE SSRWRSRDDK RKTNEYGSDG  540
DWLTREGEGE RHHSHTRKSS KYHRKARKLD DYEYHKSHKV DGDGRDKCRD RETYHDSRKK  600
SLRHSRKAGY AGYHGDSKHR SHNTDRGWSD KDSHCDELLE KGEVRHRLQF RGQLNEVSDF  660
SNDQREPAKC LEDQGGHLNR DIRKADSCNE NLRLGRSHDS SSSSQYDERY RSHDLHLRYS  720
SDVQMDKQDR WESEVYSDKK PHKSRTATSS SSPGRYNGRG KSCDYDIYHY YDKAHEENPS  780
ESEEVIPKHQ KSQRKSDTNH YEQYSGKIEN ESRSSSSGKL SHGRCLNSSE EKDFHEDDKE  840
LRRHHKKNWS HPSFDDHKKH GE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	587	600	KCRDRETYHDSRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44785.1	3e-11	C3H family protein