PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON62678.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family HD-ZIP
Protein Properties Length: 854aa    MW: 92388.4 Da    PI: 6.0589
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON62678.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.57.1e-21139194156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++eLe+lF+++++p++++r eL+++l+L++rqVk+WFqNrR+++k
  PON62678.1 139 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLSLETRQVKFWFQNRRTQMK 194
                 688999***********************************************999 PP
2START206.31.2e-643445691206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela++a++elvk+a+ +ep+W +s     e +n++e++++f++  +     + +ea+r++gvv+ ++  lve+l+d++ +W e+++    + +t++vis
  PON62678.1 344 ELALAAMDELVKMAQTDEPLWIRSLeggrEVLNQEEYMRSFTPCIGmkpngFVTEASRETGVVIINSLALVETLMDSN-RWAEMFPcviaRTSTTDVIS 441
                 5899**************************************9988999*9***************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                 +g      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ ++  + +  +++lpSg+++++++ g+skvtwveh++++++++
  PON62678.1 442 NGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRETSSgAATFLNCRRLPSGCVVQDMPSGYSKVTWVEHAEYDESQV 540
                 *********************************************************999*************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 hwllrslvksglaegaktwvatlqrqcek 206
                 h+l+r+l++sg+ +ga++wvatlqrqce+
  PON62678.1 541 HQLYRPLLSSGMGFGAQRWVATLQRQCEC 569
                 ***************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    
MSFGGFLDNS TSTTGGGGGG ARLVAENPYS SSNDNIGNGN DINHTNTNTI SIMPSTAIAQ  60
PRLVTQSLTK SMFNSPGLSL ALQTNIDGQG DMIRNMAESF EPGSGRRSRD EEHESRSGSD  120
NMDGGSGDDQ DAADKPPRKK RYHRHTPQQI QELEALFKEC PHPDEKQRLE LSRRLSLETR  180
QVKFWFQNRR TQMKTQLERH ENSLLRQEND KLRAENMSIR DAMRNPMCTN CGSPAIIGEI  240
SIEEQHLRIE NARLKDELER VCALAGKFLG RPISALATSM APPLPSSALE LGVGSNGFGG  300
LNTVATTMPD FGISSNTLPV LPTSRPPAGV QVLDRSIERS MYLELALAAM DELVKMAQTD  360
EPLWIRSLEG GREVLNQEEY MRSFTPCIGM KPNGFVTEAS RETGVVIINS LALVETLMDS  420
NRWAEMFPCV IARTSTTDVI SNGMGGTRNG ALQLMHAELQ VLSPLVPVRE VNFLRFCKQH  480
AEGVWAVVDV SIDTIRETSS GAATFLNCRR LPSGCVVQDM PSGYSKVTWV EHAEYDESQV  540
HQLYRPLLSS GMGFGAQRWV ATLQRQCECL AILMSSTVPT RDHTAGITAS GRRSMLKLAQ  600
RMTDNFCAGV CASTVHKWNK LNAGNVDEDV RVMTRKSVDD PGEPPGIVLS AATSVWLPVS  660
PQRLFDFLRD ERLRSEWDIL SNGGPMQEMA HIAKGQDHGN CVSLLRASAM NTNQSSMLIL  720
QETCIDAAGS LVVYAPVDIP AMHVVMNGGD SAYVALLPSG FAIVPDGPGS RGAMASTANG  780
GGGNNHNNGG NGSNGSGSGG DGPHRVGGSL LTVAFQILVN SLPTAKLTVE SVETVNNLIS  840
CTVQKIKAAL QCES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein