PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON57716.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

SBP

Protein Properties

Length: 435aa MW: 47092.2 Da PI: 7.6132

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON57716.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.3	2.5e-39	187	264	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvCe+hskap+v+vsg eqrfCqqCsrfh +sef+e+krsC+rrLa+hnerrrk+++ PON57716.1 187 RCQVEGCHVALVNAKDYHRRHKVCEMHSKAPKVMVSGSEQRFCQQCSRFHVVSEFEESKRSCKRRLAGHNERRRKSSH 264 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MEIGGSNTLG GRGQSVNINI GTTSTLAWDM WELSNSNTTR MDWTTTSTTA GDKVSLYTTS 60 ESTSTADEGL TSGPRTHGSG SGQGPLVFRG YGEQGVVGLH LHHQTLYNAV DGAHLHPDPH 120 LVCLKLGKRH YFEDASGAAA GQGPMGERRV AGFPMGMMKK GKANLHTGGC GIAAAAAPSL 180 LPATVPRCQV EGCHVALVNA KDYHRRHKVC EMHSKAPKVM VSGSEQRFCQ QCSRFHVVSE 240 FEESKRSCKR RLAGHNERRR KSSHDSIARS SSHHASTTGR ALSLLSSRTD YSWVPPSESD 300 LSSRSSAALR ELIAENRAAI LAHQLILDKD TWHSSHHHPG DDQDFSADAS AQRGGGAASV 360 VFGPIESHHH QMFPPEPQQG WERMNENGAH VTLDLMQAPG PAFGTFMSSR GKTKSEDEDC 420 SDHHLWNSFQ GHNLV

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MEIGGSNTLG GRGQSVNINI GTTSTLAWDM WELSNSNTTR MDWTTTSTTA GDKVSLYTTS  60
ESTSTADEGL TSGPRTHGSG SGQGPLVFRG YGEQGVVGLH LHHQTLYNAV DGAHLHPDPH  120
LVCLKLGKRH YFEDASGAAA GQGPMGERRV AGFPMGMMKK GKANLHTGGC GIAAAAAPSL  180
LPATVPRCQV EGCHVALVNA KDYHRRHKVC EMHSKAPKVM VSGSEQRFCQ QCSRFHVVSE  240
FEESKRSCKR RLAGHNERRR KSSHDSIARS SSHHASTTGR ALSLLSSRTD YSWVPPSESD  300
LSSRSSAALR ELIAENRAAI LAHQLILDKD TWHSSHHHPG DDQDFSADAS AQRGGGAASV  360
VFGPIESHHH QMFPPEPQQG WERMNENGAH VTLDLMQAPG PAFGTFMSSR GKTKSEDEDC  420
SDHHLWNSFQ GHNLV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	245	252	KRSCKRRL
2	249	260	KRRLAGHNERRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.3	2e-37	SBP family protein