PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON56388.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C2H2
Protein Properties Length: 248aa    MW: 27068.9 Da    PI: 6.785
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON56388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002796118123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C + F ++  L  H++ H
  PON56388.1  96 FSCNYCRRKFYSSQALGGHQNAH 118
                 89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MITPDINLEC ENNSEVSSQV ASNAALQDSS PNPSKDSTTS SSCLTNVIKL QEDSRPVSLD  60
LTLQFSSSTN DELKGRGESS SDVATHTSVT TIPRVFSCNY CRRKFYSSQA LGGHQNAHKR  120
ERTMAKRAMR MGIFSGRYTS LASLPLHGSA FRSLGVEAHA AVHQRAIPSE RPPDTRGGAR  180
FQQGYYGLPV FVDDDDVDLF WPGSFRQVDE GFGGGIDVQF TQSSDRNVVT KLPSPRTDSS  240
TPDLTLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.16e-43C2H2 family protein