PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON56015.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

Trihelix

Protein Properties

Length: 623aa MW: 70165.6 Da PI: 6.8615

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON56015.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.5	1e-29	147	232	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea PON56015.1 147 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 232 8***********************************999*************************98..55667*****85 PP
2	trihelix	62.7	8.3e-20	453	536	2	82
trihelix 2 Wtk.qevlaLiearremeerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyf 82 W++ +ev Li++r++m++r+++g +++ lWe++++km+ g+ers +Ck+kwe++n++ k ke++kkr+ + +ss+ yf PON56015.1 453 WPEsSEVSRLIQLRTSMDSRFQQGGfSEEVLWEDIAAKMACLGYERSGLMCKDKWESINNYVKTSKESSKKRKeNSRSSSGNYF 536 654279**************9754889****************************************9525555566666 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MEMEDQYGMA DLRQLMNGTR SHFPAIPQPT ELFPGHRPGI APQQQQQQQV VQQPFEMMMM 60 GRPVGATEIM PRGPFHHHHV DHHHHQQHHQ FIRSESSAGT TSGAASITTV TATSAPSLSG 120 GGGGGGGGFE LGESGGCLGM MDGGTGRWPR QETLTLLEIR SRLDSKFKEA NQKGPLWDEV 180 SRIMSEEHGY QRSGKKCREK FENLYKYYKK TKEGKAGRQD GKHYRFFRQL EALYGETSNQ 240 VSVPEAHFVG NNLRFQTLNN TTTSQANNQL EGPYQSQTNK HNCDSLSLSN SSDFDSSSSD 300 DNDFTNAGLM MDNDSSEKMM MRRKRRSGRS WKVKIKEFID SQMRKLMEKQ EVWLEKLMKT 360 LEQKEKERTL REEEWRKQES ARIDREHKFW ANERAWIEAR DAALMEALHK LTGKEVNYKA 420 SSPEGLMLAA GENNVQDEDG SEIQNNVAKV DTWPESSEVS RLIQLRTSMD SRFQQGGFSE 480 EVLWEDIAAK MACLGYERSG LMCKDKWESI NNYVKTSKES SKKRKENSRS SSGNYFQNNN 540 NENSATTANN NSLYNHGGGG GGAYSCDQMS DQGGQNTARL QVNDGSSPSN ANVHDSCFPF 600 LMGEGDNLWE NYGLKLSKGG QSQ

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MEMEDQYGMA DLRQLMNGTR SHFPAIPQPT ELFPGHRPGI APQQQQQQQV VQQPFEMMMM  60
GRPVGATEIM PRGPFHHHHV DHHHHQQHHQ FIRSESSAGT TSGAASITTV TATSAPSLSG  120
GGGGGGGGFE LGESGGCLGM MDGGTGRWPR QETLTLLEIR SRLDSKFKEA NQKGPLWDEV  180
SRIMSEEHGY QRSGKKCREK FENLYKYYKK TKEGKAGRQD GKHYRFFRQL EALYGETSNQ  240
VSVPEAHFVG NNLRFQTLNN TTTSQANNQL EGPYQSQTNK HNCDSLSLSN SSDFDSSSSD  300
DNDFTNAGLM MDNDSSEKMM MRRKRRSGRS WKVKIKEFID SQMRKLMEKQ EVWLEKLMKT  360
LEQKEKERTL REEEWRKQES ARIDREHKFW ANERAWIEAR DAALMEALHK LTGKEVNYKA  420
SSPEGLMLAA GENNVQDEDG SEIQNNVAKV DTWPESSEVS RLIQLRTSMD SRFQQGGFSE  480
EVLWEDIAAK MACLGYERSG LMCKDKWESI NNYVKTSKES SKKRKENSRS SSGNYFQNNN  540
NENSATTANN NSLYNHGGGG GGAYSCDQMS DQGGQNTARL QVNDGSSPSN ANVHDSCFPF  600
LMGEGDNLWE NYGLKLSKGG QSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-125	Trihelix family protein