PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON55950.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 575aa    MW: 64674.9 Da    PI: 5.9875
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON55950.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS433.61.5e-1322055741373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+ ++++d e  ++l+++ ++++s +g+p+qRl ay++e++ ar  +s++++y+al+++e +   s++ l+++++++e++P+lkf++++aN
  PON55950.1 205 LKQLLIACAKSLAENDIETFDKLIEKARTIVSISGEPIQRLGAYMVEGMVARKEGSGTNIYRALRCREPE---SKDLLSYMQILYEICPYLKFGYMAAN 300
                 689******************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p ++  + + l+++++rLa + +++++p+ef + v     d++ e+L v
  PON55950.1 301 GAIAEACRNEDRIHIIDFQIAQGTQWLTLLQALAARPNGPPHVRITGIDDPVNQyaRGDGLQAVERRLATISQNFKIPVEFYA-VPVFAPDVTREMLGV 398
                 ***************************************************999999**************************.688899********* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEalaVn+ lqlh+++desv+++++rde+L++vkslsPkvv++veqe+++n+++F++rf+eal++y a+f+s++++lpr+s++ri+vE+++l+r+iv
  PON55950.1 399 RPGEALAVNFPLQLHHTPDESVDVNNPRDELLRMVKSLSPKVVTLVEQESNTNTTPFFHRFVEALDFYLAMFESIDVTLPRNSKHRINVEQHCLARDIV 497
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 nvvaceg+er+erhe l+kW++rl++aGF+++pls+++++ +++llr ++ + y++ e++g+++lgWkdr+L+s+SaW
  PON55950.1 498 NVVACEGRERVERHELLGKWKSRLTMAGFRQYPLSSYVNSVIRSLLRCYS-EHYTLAEKDGAMLLGWKDRNLISASAW 574
                 **********************************************9999.66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    
MDSHELFGIS VTGPSALSYT PSHPTVPSLP SRLLGSLKFE VGNSPSSPFS THFDSENSLT  60
TLSDSQEQYS STENNLSGVS PPPCNSPLET NSYFIYPSGN SLLQDANPSQ NFKHALLELE  120
TALMGPDDDV DDDRLIRPKP SYEEGSSQHS WREERQGQQP SLIQRQTSLV SRQRQSGQVV  180
RNEKRHKSME EDSLYQQGLP PPDNLKQLLI ACAKSLAEND IETFDKLIEK ARTIVSISGE  240
PIQRLGAYMV EGMVARKEGS GTNIYRALRC REPESKDLLS YMQILYEICP YLKFGYMAAN  300
GAIAEACRNE DRIHIIDFQI AQGTQWLTLL QALAARPNGP PHVRITGIDD PVNQYARGDG  360
LQAVERRLAT ISQNFKIPVE FYAVPVFAPD VTREMLGVRP GEALAVNFPL QLHHTPDESV  420
DVNNPRDELL RMVKSLSPKV VTLVEQESNT NTTPFFHRFV EALDFYLAMF ESIDVTLPRN  480
SKHRINVEQH CLARDIVNVV ACEGRERVER HELLGKWKSR LTMAGFRQYP LSSYVNSVIR  540
SLLRCYSEHY TLAEKDGAML LGWKDRNLIS ASAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-168GRAS family protein