PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON55416.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 402aa MW: 44609.4 Da PI: 6.4604

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON55416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.6	4.5e-13	153	204	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ PON55416.1 153 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 204 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MALETVVYNS QDPFSYGYKD FYSSMVGPTT NLGYDFGLQE EEEHKSLVGI FDNHIMDQNI 60 HANFDYYYSS PPSVLQSLTE LGSPHSSSPE ASCPPPPLPP PLPLDHQSPP RGSSPSLPGQ 120 LTNPVDGPPA TGSGRRKRRR TRSSKNKEEL ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP 180 PSYVQRGDQA SIIGGAINFV KELEQLLQSM EGHKVRTKPE DHDHDHDHHH QDDNTKNGRG 240 FSSSSSSNSS SSSSSSSSTT TYSSSSSSPL AEFFTFPQYS TRASHYCNNN ISENYSKDPI 300 NNSNNQWATA AAADIEVTMM DSHANLKILS KKRPRQLLKM VAGFGVLCLS VLHLNVTTVD 360 QMVLYSVSVK IEEGCQLNTV DEIASAVNQM LHRIQEEPAL FS

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MALETVVYNS QDPFSYGYKD FYSSMVGPTT NLGYDFGLQE EEEHKSLVGI FDNHIMDQNI  60
HANFDYYYSS PPSVLQSLTE LGSPHSSSPE ASCPPPPLPP PLPLDHQSPP RGSSPSLPGQ  120
LTNPVDGPPA TGSGRRKRRR TRSSKNKEEL ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP  180
PSYVQRGDQA SIIGGAINFV KELEQLLQSM EGHKVRTKPE DHDHDHDHHH QDDNTKNGRG  240
FSSSSSSNSS SSSSSSSSTT TYSSSSSSPL AEFFTFPQYS TRASHYCNNN ISENYSKDPI  300
NNSNNQWATA AAADIEVTMM DSHANLKILS KKRPRQLLKM VAGFGVLCLS VLHLNVTTVD  360
QMVLYSVSVK IEEGCQLNTV DEIASAVNQM LHRIQEEPAL FS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	140	RKRRR
2	136	141	RKRRRT
3	154	165	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	6e-77	bHLH family protein