PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON54980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 227aa MW: 26239.6 Da PI: 8.2762 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.2 | 5.2e-19 | 14 | 63 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kri+++ +rqvtfskR+ g++ KA EL +L++aev i+fs+++k+y + PON54980.1 14 KRINEENKRQVTFSKRKLGLFNKAAELNILTGAEVVAIVFSQHQKIYSFV 63 79*********************************************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MVKVTKGRQK VEIKRINEEN KRQVTFSKRK LGLFNKAAEL NILTGAEVVA IVFSQHQKIY 60 SFVSPGSDYL IKSYRNWGTA PNNDIINYAP QDQHIDHHHH HHHGLGHGYH NLEAEVNFLE 120 EKNKLALKNR IDMEANGERE GFWWNRPHEN MDFEEAKRFR DALLGFNEMV EKKVKEMTMM 180 TKQPANNYFP SSNEAESEAC FGQPWSRGGN NPTFVHGDMS GVKCFLP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 4e-22 | M-type_MADS family protein |