PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON54964.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family SBP
Protein Properties Length: 344aa    MW: 37935.4 Da    PI: 8.6825
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON54964.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.11.9e-4141117278
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 C v+gC++dls++++yhrrhkvCevhsk+p+v++ g+eqrfCqqCsrfh+l efDeekrsCr+rL++hn+rrrk+q+
  PON54964.1  41 CLVDGCNSDLSKCRDYHRRHKVCEVHSKTPKVTIGGREQRFCQQCSRFHSLVEFDEEKRSCRKRLDGHNRRRRKPQP 117
                 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MEDGSKIEWK DLGTLDMESS SSSMPLKRTR GHSNGIQVPS CLVDGCNSDL SKCRDYHRRH  60
KVCEVHSKTP KVTIGGREQR FCQQCSRFHS LVEFDEEKRS CRKRLDGHNR RRRKPQPEPM  120
SISSGRFLSS YQGPRFSPFH SPQAFPSAAM NSALAMAGAA KSESDVVLDK IHSQFSVTRE  180
NPFPGSLNHS YTGGKEISFL QSPSCTLPEA SSVSQSFMDS SSSLNNCGNG QRIFTNNWLY  240
RDTVDSNCAL SLLSSTPTDT KEIGLSHMVQ PNSSTSRRAQ SLIQASLHYC GLGMVSEPEV  300
KPALFTDGSV NGSFHCQEMF RIRPEGSSSG GPHHNSPRGS RIPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198115KRSCRKRLDGHNRRRRKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-46SBP family protein