PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON54885.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C3H
Protein Properties Length: 340aa    MW: 38331.1 Da    PI: 7.0332
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON54885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH291.8e-0987111126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC  f   G C+ G++C+FaHg
  PON54885.1  87 FKTRLCAKFKM-GLCRNGENCNFAHG 111
                 69*********.*************8 PP
2zf-CCCH28.42.8e-09150172325
                 S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                 ++lC+ f+ + +C+yGdrC+F H
  PON54885.1 150 MKLCKKFYNGEECPYGDRCNFLH 172
                 689******66************ PP
3zf-CCCH42.51.1e-13232257126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC+ + +tG+C++G++C+FaHg
  PON54885.1 232 WKTKLCNKWEQTGHCPFGEKCHFAHG 257
                 8************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MSFPDSRSPF MQSAPSYGAG TDAISCWPQF PMNNEDQQFD FEQQPPPFKR ARNSEESQSN  60
SSPYPPMNTR MIPPNAPINK GISNIFFKTR LCAKFKMGLC RNGENCNFAH GIEDMRQPPP  120
NWQELVGLRD NEDRSSSGNW EDDQKIIHRM KLCKKFYNGE ECPYGDRCNF LHEDPAKYRD  180
DLGRFRESSA ISIGTTLPPV INGNVSSNSE DSRVVNSVSD PSRVNMMKPV YWKTKLCNKW  240
EQTGHCPFGE KCHFAHGNAE LQASSGRVEA EALNIALQTK PQVAAIDSLP SATSVAAFDE  300
DVQGKKCLLK WKGPKKINRI YGDWLDDLPL VQNLPSRVES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.17e-89C3H family protein