PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON49223.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 411aa    MW: 46055.3 Da    PI: 9.5962
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON49223.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.73e-181054246
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                 i+n+  r++tf kR++g++KKA+E S+LCd++ ++ + +++  l
  PON49223.1 10 LIKNEKSRKTTFQKRKKGMMKKASEFSILCDIDMCLFVSGPKSDL 54
                59*************************************998765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    
MGRGKLKLEL IKNEKSRKTT FQKRKKGMMK KASEFSILCD IDMCLFVSGP KSDLDLAKTR  60
PGQKKSHDHE VVAAASEIET FPPESDRVLR IIQKYQKAVM QRPPNKSYNL AGLLAERNKK  120
VHSDISRFRK KFYGLKYPTS AELIDGLSAD ELEELVGRLD GKIDVVKKII VEKGKENALR  180
LVVNNNSHDD HQQQQLVSLS NNHNFSTNYS IVDMSERPPP PQIDSSFSVF NPNFMMIKLL  240
GDDNNQASTS TSRFDDRHDQ FKYYFNVSSS NTTNNMHYGT DMTTLRGPVY DDHATAGMMF  300
DGTSTTASTQ YSTVTTALRS SHDPTAGMSL EKHTMMFNGS GAAGTASSSM QSHGYYYRPP  360
LVPPMMVPMQ YPMNVMNVVP RLGSFHVASP APRVNELTDV VNDFLKNKNI G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.16e-17M-type_MADS family protein