PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON49216.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C3H
Protein Properties Length: 378aa    MW: 41688.2 Da    PI: 7.0353
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON49216.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.82e-14305330227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ktelC+ + +tG C+yGd C+FaHg+
  PON49216.1 305 KTELCNKWEQTGACPYGDHCQFAHGM 330
                 9***********************95 PP

2zf-CCCH20.58.7e-07342367126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykte+Cr  +++  C+yG rC+F H+
  PON49216.1 342 YKTEICRMVLAGDRCPYGHRCHFRHS 367
                 9**********55**********998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MESDAFSPQS ETNSASPNSP RFAALAASTC QNFLDVSPET RDFGADFFSL YRAIFQSRSP  60
QIPSSLSLTP STRSPSSAGG DDDEMSTEHR LKQARRILEQ QELNDYCDLI EAHLNDLSKD  120
IDYLRRENAE LRSVNGELLK LISSPAAFRG FLLSSTNQSL IDRFRRLDLG GVRTTTSPHN  180
VGHGGSEDFS DISPTSVMET NRFERRNPDP RVSLPKSISV RSTGYQKANQ PAGSSREGPS  240
RGSTTRPRAP TSTVSGTQRV YVPGVSGSDG GGSGSSSTGG MQKDVEQENM QGGVELEVYN  300
QGMLKTELCN KWEQTGACPY GDHCQFAHGM AELRPVIRHP RYKTEICRMV LAGDRCPYGH  360
RCHFRHSLTE QEKLMLPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-66C3H family protein