PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON49216.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | C3H | ||||||||
Protein Properties | Length: 378aa MW: 41688.2 Da PI: 7.0353 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 44.8 | 2e-14 | 305 | 330 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ktelC+ + +tG C+yGd C+FaHg+ PON49216.1 305 KTELCNKWEQTGACPYGDHCQFAHGM 330 9***********************95 PP | |||||||
2 | zf-CCCH | 20.5 | 8.7e-07 | 342 | 367 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte+Cr +++ C+yG rC+F H+ PON49216.1 342 YKTEICRMVLAGDRCPYGHRCHFRHS 367 9**********55**********998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence |
MESDAFSPQS ETNSASPNSP RFAALAASTC QNFLDVSPET RDFGADFFSL YRAIFQSRSP 60 QIPSSLSLTP STRSPSSAGG DDDEMSTEHR LKQARRILEQ QELNDYCDLI EAHLNDLSKD 120 IDYLRRENAE LRSVNGELLK LISSPAAFRG FLLSSTNQSL IDRFRRLDLG GVRTTTSPHN 180 VGHGGSEDFS DISPTSVMET NRFERRNPDP RVSLPKSISV RSTGYQKANQ PAGSSREGPS 240 RGSTTRPRAP TSTVSGTQRV YVPGVSGSDG GGSGSSSTGG MQKDVEQENM QGGVELEVYN 300 QGMLKTELCN KWEQTGACPY GDHCQFAHGM AELRPVIRHP RYKTEICRMV LAGDRCPYGH 360 RCHFRHSLTE QEKLMLPR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 2e-66 | C3H family protein |