PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON48721.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 597aa MW: 66351.1 Da PI: 7.3269

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON48721.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.1	5.6e-07	305	326	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC f+ +G C++G++C+F H+ PON48721.1 305 LCFKFLSSGSCPRGEKCHFQHD 326 78889999*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MAPPRILLCG DVLGGLNQLF KRVASVNKSA GPFDALLCVG QFFPDSPERL GEFTDYIEGR 60 SEIPIATYFI GDYGVGAPKV LLAASRESGN QGFKMDGLKI CDNLYWLKGS GKFTLHGLLV 120 AYLSGRHSSV GQQFGTYSQD DVDALRAIAE EPGIVDIFLT YPFMTDVPPG ISESSGSDST 180 VAELVSEIKP RYHIAGTKGV FYAREPYSNI DAVHVTRFFG LAPVGNKDKQ KFIHAISPTP 240 ASMMSAADIS MKSASTTLSP YAVQKLVDGK EASKRTNDSV TDSQYWRYDV STKRQKHGAG 300 DGDKLCFKFL SSGSCPRGEK CHFQHDMAAR EQYMRGVCFD FLNKGKCERG PDCNFKHSLQ 360 DEGEGNPHRR RGSDNASTNR SKECWFCISS PNVESHLIIS IGENFYCALA KGPLVKDHVL 420 VIPVEHLPNT ITLPQKCEIE LVRFQSSLKK YYKNQGKEVV FFEWVSKRSS HANLQAIPVP 480 SSKAAALQNI FNFAAEKLGF KFAAMKFNNN SDGRNYLRTQ FDGNLSFFYV ELPDGTTLAH 540 VVEETERFPA QFGREVLAGL LDMAKRADWR NCTYSKEEET KMAGDFKSQF QEFDPNE

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MAPPRILLCG DVLGGLNQLF KRVASVNKSA GPFDALLCVG QFFPDSPERL GEFTDYIEGR  60
SEIPIATYFI GDYGVGAPKV LLAASRESGN QGFKMDGLKI CDNLYWLKGS GKFTLHGLLV  120
AYLSGRHSSV GQQFGTYSQD DVDALRAIAE EPGIVDIFLT YPFMTDVPPG ISESSGSDST  180
VAELVSEIKP RYHIAGTKGV FYAREPYSNI DAVHVTRFFG LAPVGNKDKQ KFIHAISPTP  240
ASMMSAADIS MKSASTTLSP YAVQKLVDGK EASKRTNDSV TDSQYWRYDV STKRQKHGAG  300
DGDKLCFKFL SSGSCPRGEK CHFQHDMAAR EQYMRGVCFD FLNKGKCERG PDCNFKHSLQ  360
DEGEGNPHRR RGSDNASTNR SKECWFCISS PNVESHLIIS IGENFYCALA KGPLVKDHVL  420
VIPVEHLPNT ITLPQKCEIE LVRFQSSLKK YYKNQGKEVV FFEWVSKRSS HANLQAIPVP  480
SSKAAALQNI FNFAAEKLGF KFAAMKFNNN SDGRNYLRTQ FDGNLSFFYV ELPDGTTLAH  540
VVEETERFPA QFGREVLAGL LDMAKRADWR NCTYSKEEET KMAGDFKSQF QEFDPNE